Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OMP06_RS01900 Genome accession   NZ_CP110462
Coordinates   399665..400891 (-) Length   408 a.a.
NCBI ID   WP_065086709.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain RBH2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 394665..405891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS01870 (OMP06_01870) - 394696..396006 (+) 1311 WP_000753277.1 tetratricopeptide repeat protein -
  OMP06_RS01875 (OMP06_01875) - 396083..396409 (+) 327 WP_000099685.1 pyrimidine/purine nucleoside phosphorylase -
  OMP06_RS01880 (OMP06_01880) rlmB 396511..397260 (+) 750 WP_001118150.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OMP06_RS01885 (OMP06_01885) - 397296..398210 (+) 915 WP_000075011.1 DMT family transporter -
  OMP06_RS01890 (OMP06_01890) coaE 398207..398803 (-) 597 WP_000874128.1 dephospho-CoA kinase -
  OMP06_RS01895 (OMP06_01895) pilD 398805..399665 (-) 861 WP_001152272.1 A24 family peptidase Machinery gene
  OMP06_RS01900 (OMP06_01900) pilC 399665..400891 (-) 1227 WP_065086709.1 type II secretion system F family protein Machinery gene
  OMP06_RS01905 (OMP06_01905) pilB 400921..402633 (-) 1713 WP_001274987.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OMP06_RS01910 (OMP06_01910) tpiA 402924..403718 (+) 795 WP_000016939.1 triose-phosphate isomerase -
  OMP06_RS01915 (OMP06_01915) secG 403731..404060 (+) 330 WP_000555570.1 preprotein translocase subunit SecG -
  OMP06_RS01935 (OMP06_01935) rimP 404702..405226 (+) 525 WP_000777730.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44964.53 Da        Isoelectric Point: 10.0115

>NTDB_id=754987 OMP06_RS01900 WP_065086709.1 399665..400891(-) (pilC) [Acinetobacter baumannii strain RBH2]
MAVKKAQMMPTFAYEGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDNLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAIVVTIILMVKVVPVFQDLFASFGADLPAFTQMVVNMSKWMKEYWFIMIIAIGAVIA
AFLEAKKRSKKFRDGLDKLALKLPIFGDLVYKVIIARYSRTLATTFAAGVPLIDALESTAGATNNVIYEKAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=754987 OMP06_RS01900 WP_065086709.1 399665..400891(-) (pilC) [Acinetobacter baumannii strain RBH2]
ATGGCTGTCAAAAAGGCACAAATGATGCCGACTTTTGCTTATGAAGGGGTTGACCGTAAGGGCGTAAAAATCAAAGGAGA
ACTTCCGGCTAAAAACATGGCTTTAGCCAAAGTAACCTTACGCAAACAAGGGGTGACTGTTCGAAATATACGTGAAAAAC
GTAAAAATATTCTTGAAGGTTTATTCAAGAAAAAAGTCACCACACTCGATATTACGATTTTTACTCGACAATTGGCGACC
ATGATGAAAGCTGGTGTACCACTCGTACAAGGCTTTGAAATTGTAGCTGAAGGTTTAGAAAACCCGGCCATGCGTGAGGT
TGTACTCGGTATTAAAGGTGAAGTCGAAGGTGGTAGTACTTTTGCCTCAGCTTTAAGAAAATATCCTCAACATTTTGATA
ACTTGTTTTGTTCACTTGTTGAGTCTGGTGAACAATCAGGCGCACTCGAAACGATGCTGGACCGCGTTGCAATTTACAAA
GAAAAAAGTGAGTTGCTCAAGCAAAAAATCAAGAAAGCAATGAAATACCCAGCAACAGTTATTGTAGTAGCCATTGTGGT
GACCATTATTTTGATGGTTAAAGTAGTTCCCGTTTTCCAAGATTTATTTGCGTCTTTTGGAGCAGATTTACCTGCATTTA
CGCAAATGGTTGTGAATATGTCGAAATGGATGAAGGAATACTGGTTCATTATGATTATTGCGATTGGCGCAGTCATTGCT
GCCTTTCTGGAAGCAAAAAAACGCAGTAAAAAGTTTCGTGATGGCTTAGATAAACTGGCGCTTAAGTTACCTATTTTTGG
GGACTTAGTTTATAAAGTAATTATTGCCCGCTATAGCCGCACGCTTGCTACAACATTTGCCGCAGGTGTTCCACTTATTG
ATGCATTAGAATCGACTGCTGGCGCAACCAATAACGTGATTTATGAAAAAGCTGTGATGAAAATTCGTGAAGATGTCGCA
ACGGGTCAACAGCTTCAGTTTGCTATGCGGGTCTCTAATCGTTTTCCATCTATGGCTATACAAATGGTAGCAATTGGTGA
AGAATCGGGTGCACTAGACAGCATGCTCGATAAAGTTGCCACTTATTATGAAAATGAAGTGGATAATGCCGTTGATGGTT
TAACATCTATGATGGAACCTTTAATTATGGCAATTTTAGGGGTGCTCGTAGGCGGTCTAGTCATTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

99.265

100

0.993
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.506

99.265

0.591
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

47.236

97.549

0.461
  pilG Neisseria meningitidis 44/76-A

47.236

97.549

0.461
  pilC Vibrio cholerae strain A1552

42.157

100

0.422
  pilC Vibrio campbellii strain DS40M4

40.594

99.02

0.402
  pilC Thermus thermophilus HB27

36.658

98.284

0.36