Detailed information NTG0754986

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OMP06_RS01895
• Genome accession: NZ_CP110462
• Coordinates: 398805..399665 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152272.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain RBH2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393805..404665

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMP06_RS01870 (OMP06_01870)	-	394696..396006 (+)	1311	WP_000753277.1	tetratricopeptide repeat protein	-
OMP06_RS01875 (OMP06_01875)	-	396083..396409 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
OMP06_RS01880 (OMP06_01880)	rlmB	396511..397260 (+)	750	WP_001118150.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OMP06_RS01885 (OMP06_01885)	-	397296..398210 (+)	915	WP_000075011.1	DMT family transporter	-
OMP06_RS01890 (OMP06_01890)	coaE	398207..398803 (-)	597	WP_000874128.1	dephospho-CoA kinase	-
OMP06_RS01895 (OMP06_01895)	pilD	398805..399665 (-)	861	WP_001152272.1	A24 family peptidase	Machinery gene
OMP06_RS01900 (OMP06_01900)	pilC	399665..400891 (-)	1227	WP_065086709.1	type II secretion system F family protein	Machinery gene
OMP06_RS01905 (OMP06_01905)	pilB	400921..402633 (-)	1713	WP_001274987.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OMP06_RS01910 (OMP06_01910)	tpiA	402924..403718 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
OMP06_RS01915 (OMP06_01915)	secG	403731..404060 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32145.52 Da
• Isoelectric Point: 7.1041

>NTDB_id=754986 OMP06_RS01895 WP_001152272.1 398805..399665(-) (pilD) [Acinetobacter baumannii strain RBH2]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPFIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=754986 OMP06_RS01895 WP_001152272.1 398805..399665(-) (pilD) [Acinetobacter baumannii strain RBH2]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGTTTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTATTTGGTCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441