Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LJ360_RS14300 Genome accession   NZ_CP110342
Coordinates   3123317..3124543 (+) Length   408 a.a.
NCBI ID   WP_264994395.1    Uniprot ID   A0A9E7W736
Organism   Marinobacter sp. AN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3118317..3129543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS14285 (LJ360_14285) - 3119199..3120611 (-) 1413 WP_264994394.1 IS1182 family transposase -
  LJ360_RS14290 (LJ360_14290) - 3120708..3121214 (-) 507 WP_320108770.1 pilin -
  LJ360_RS14295 (LJ360_14295) pilB 3121596..3123314 (+) 1719 WP_091852308.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LJ360_RS14300 (LJ360_14300) pilC 3123317..3124543 (+) 1227 WP_264994395.1 type II secretion system F family protein Machinery gene
  LJ360_RS14305 (LJ360_14305) pilD 3124710..3125588 (+) 879 WP_264994396.1 prepilin peptidase Machinery gene
  LJ360_RS14310 (LJ360_14310) - 3125621..3126601 (-) 981 WP_264994397.1 D-2-hydroxyacid dehydrogenase -
  LJ360_RS14315 (LJ360_14315) - 3126802..3128025 (+) 1224 WP_091852320.1 pyridoxal phosphate-dependent aminotransferase -
  LJ360_RS14320 (LJ360_14320) - 3128097..3128282 (+) 186 WP_091852323.1 CPXCG motif-containing cysteine-rich protein -
  LJ360_RS14325 (LJ360_14325) - 3128419..3128976 (+) 558 WP_264994398.1 DUF1439 domain-containing protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44626.60 Da        Isoelectric Point: 9.8158

>NTDB_id=754139 LJ360_RS14300 WP_264994395.1 3123317..3124543(+) (pilC) [Marinobacter sp. AN1]
MAQAQKVEKLQAYVWEGKDRKGNKAKGEISGTNLALVKAQLRKQGVMPSKVKRKPKPLFGGSKKVTPFDIAMFTRQLATM
MKAGVPLVQSFDIVADGLDNKGLQELVVAIRNDVASGTSFAGALRRHPKHFNDLYCNLVDSGEKAGALEQMLDRIANYLE
KTEILKKKVKKAMTYPIAVIVVAIIVTAILLVKVVPQFESLFQGFGADLPVFTQMVVNLSEWMQKWWFVVLLGIVAFVFS
FGQAKRRSQKFSDLVDKYILKIPIMGEIIDKSAVAKFGRVLSTTFASGVPLVDALDSVAGATGNAVYRDAIFKIKDEVSS
GVQLQAAMRQTDVFPVMAVQLTAIGEESGNLDEMLAKVAEHYESVVDDMVDNLTALMEPMIMSVLGVLVGGLIVAMYLPI
FQMGQVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=754139 LJ360_RS14300 WP_264994395.1 3123317..3124543(+) (pilC) [Marinobacter sp. AN1]
ATGGCACAGGCACAGAAGGTAGAAAAACTTCAGGCGTATGTCTGGGAAGGTAAGGATCGTAAGGGCAACAAGGCCAAGGG
GGAGATATCCGGCACCAACCTGGCACTGGTGAAGGCCCAGCTGCGCAAGCAGGGGGTGATGCCCAGCAAGGTCAAGCGCA
AGCCCAAGCCGCTGTTTGGTGGCAGCAAGAAGGTCACGCCCTTTGATATCGCCATGTTCACCCGCCAACTGGCCACCATG
ATGAAGGCCGGTGTTCCACTGGTGCAGAGCTTCGACATTGTGGCTGATGGCCTGGACAACAAGGGTCTGCAGGAGCTCGT
GGTTGCCATTCGCAATGACGTCGCTTCAGGTACCAGCTTTGCGGGCGCCTTACGCCGGCACCCCAAGCACTTCAATGATC
TTTACTGCAACCTGGTGGATTCCGGTGAGAAGGCCGGTGCGCTGGAACAAATGCTTGACCGGATTGCGAACTACCTTGAG
AAAACCGAGATTCTCAAGAAAAAGGTCAAGAAGGCCATGACCTATCCGATTGCGGTTATTGTGGTGGCAATCATCGTAAC
GGCGATACTGCTGGTCAAGGTTGTCCCCCAGTTTGAGAGCCTGTTCCAGGGCTTTGGTGCCGACCTTCCTGTATTTACGC
AGATGGTTGTTAACTTGTCCGAATGGATGCAGAAGTGGTGGTTCGTTGTTTTGCTTGGGATCGTAGCGTTCGTTTTTAGC
TTTGGTCAGGCAAAAAGACGATCTCAAAAGTTCTCAGACCTGGTGGACAAATACATCCTGAAAATCCCGATTATGGGGGA
GATAATCGACAAATCAGCAGTGGCCAAGTTCGGCCGGGTGCTTTCGACCACCTTCGCTTCTGGTGTGCCGCTGGTGGATG
CACTGGACTCAGTTGCTGGGGCAACGGGTAACGCGGTGTACCGTGATGCCATCTTCAAAATCAAGGACGAAGTGTCCTCA
GGTGTCCAGTTGCAAGCTGCCATGAGACAGACCGACGTCTTCCCGGTGATGGCCGTGCAGCTCACCGCCATTGGCGAGGA
GTCCGGCAACCTGGATGAAATGCTTGCCAAGGTGGCAGAGCACTATGAATCGGTGGTGGACGACATGGTGGACAACCTGA
CGGCACTGATGGAGCCGATGATTATGTCGGTGCTGGGTGTGCTGGTAGGTGGCTTGATCGTAGCCATGTACCTGCCAATC
TTCCAGATGGGTCAGGTTGTTGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(279-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

64.851

99.02

0.642
  pilC Acinetobacter baumannii D1279779

58.025

99.265

0.576
  pilC Acinetobacter baylyi ADP1

57.143

99.51

0.569
  pilC Legionella pneumophila strain ERS1305867

53.885

97.794

0.527
  pilG Neisseria gonorrhoeae MS11

42.643

98.284

0.419
  pilG Neisseria meningitidis 44/76-A

42.394

98.284

0.417
  pilC Vibrio campbellii strain DS40M4

40.15

98.284

0.395
  pilC Vibrio cholerae strain A1552

39.312

99.755

0.392