Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LJ360_RS14305 Genome accession   NZ_CP110342
Coordinates   3124710..3125588 (+) Length   292 a.a.
NCBI ID   WP_264994396.1    Uniprot ID   A0A9E7W6M6
Organism   Marinobacter sp. AN1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3119710..3130588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ360_RS14290 (LJ360_14290) - 3120708..3121214 (-) 507 WP_320108770.1 pilin -
  LJ360_RS14295 (LJ360_14295) pilB 3121596..3123314 (+) 1719 WP_091852308.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LJ360_RS14300 (LJ360_14300) pilC 3123317..3124543 (+) 1227 WP_264994395.1 type II secretion system F family protein Machinery gene
  LJ360_RS14305 (LJ360_14305) pilD 3124710..3125588 (+) 879 WP_264994396.1 prepilin peptidase Machinery gene
  LJ360_RS14310 (LJ360_14310) - 3125621..3126601 (-) 981 WP_264994397.1 D-2-hydroxyacid dehydrogenase -
  LJ360_RS14315 (LJ360_14315) - 3126802..3128025 (+) 1224 WP_091852320.1 pyridoxal phosphate-dependent aminotransferase -
  LJ360_RS14320 (LJ360_14320) - 3128097..3128282 (+) 186 WP_091852323.1 CPXCG motif-containing cysteine-rich protein -
  LJ360_RS14325 (LJ360_14325) - 3128419..3128976 (+) 558 WP_264994398.1 DUF1439 domain-containing protein -
  LJ360_RS14330 (LJ360_14330) - 3129232..3129897 (-) 666 WP_091852331.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 32659.74 Da        Isoelectric Point: 6.9995

>NTDB_id=754140 LJ360_RS14305 WP_264994396.1 3124710..3125588(+) (pilD) [Marinobacter sp. AN1]
MPTLDVFLSTPWLLYISVLFVSLCIGSFLNVVILRLPKMMHQDWRCQCEEFLAVPEKERSNEERITLSRPPSTCPSCGHR
IRPWENIPVVSYLFLRGKCSNCGTRISVRYPLIEAITALFSVLTVWLLGPSVGTLWALVLVWALVALTMIDFDTQLLPDN
ITLPLMWLGLLLNYFGYLTDFHSAFWGAVAGYLSLWSVYWLFKLVTGKEGMGHGDFKLLAAIGAWLGWQLLPAVILLSSL
VGAVVGITLMVFHRHGRDVPIPFGPYLAAAGLLALWFGDEILAGWYAWLGVG

Nucleotide


Download         Length: 879 bp        

>NTDB_id=754140 LJ360_RS14305 WP_264994396.1 3124710..3125588(+) (pilD) [Marinobacter sp. AN1]
ATGCCCACCCTTGACGTTTTCCTTTCAACTCCATGGCTGCTCTACATTTCAGTGCTTTTTGTTTCCCTGTGTATTGGCAG
CTTCCTGAACGTCGTCATCCTGCGCCTGCCCAAAATGATGCACCAGGACTGGCGTTGTCAGTGTGAAGAATTCCTGGCGG
TTCCGGAGAAGGAGCGCAGTAACGAGGAACGCATCACCCTGTCCCGGCCACCCTCCACCTGCCCTTCCTGCGGCCACAGG
ATTCGCCCCTGGGAAAATATTCCGGTAGTCAGTTATCTGTTCCTTCGGGGCAAGTGCAGCAACTGCGGCACCCGGATTTC
AGTGCGCTATCCGCTGATAGAGGCGATTACCGCGCTGTTTTCAGTGTTGACCGTATGGCTGCTCGGGCCTTCTGTTGGCA
CCTTATGGGCACTGGTGCTGGTATGGGCGCTTGTTGCGCTGACCATGATCGATTTCGACACCCAGCTGCTGCCGGATAAC
ATCACCCTGCCTCTGATGTGGCTGGGACTGCTGCTGAACTACTTCGGTTATCTGACGGACTTTCACAGTGCGTTCTGGGG
TGCCGTGGCTGGCTACCTTTCCTTGTGGTCCGTTTACTGGCTGTTCAAGCTGGTCACCGGCAAGGAGGGCATGGGGCACG
GTGATTTCAAGCTGCTGGCCGCCATCGGTGCCTGGCTGGGCTGGCAGTTGCTACCGGCAGTGATTTTGCTGTCTTCCCTG
GTGGGCGCGGTTGTGGGAATCACCCTGATGGTGTTCCACCGCCATGGGCGGGATGTGCCGATTCCGTTCGGACCTTACCT
GGCAGCAGCGGGGTTGCTGGCGTTGTGGTTCGGGGATGAGATTCTGGCCGGGTGGTATGCGTGGTTGGGGGTTGGTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(138-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

54.71

94.521

0.517
  pilD Acinetobacter nosocomialis M2

53.986

94.521

0.51
  pilD Vibrio campbellii strain DS40M4

51.579

97.603

0.503
  pilD Vibrio cholerae strain A1552

50.515

99.658

0.503
  pilD Neisseria gonorrhoeae MS11

49.425

89.384

0.442