Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OLL83_RS02350 Genome accession   NZ_CP110338
Coordinates   500387..501652 (-) Length   421 a.a.
NCBI ID   WP_054744931.1    Uniprot ID   -
Organism   Shewanella algae strain B2215466     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 495387..506652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL83_RS02325 (OLL83_000465) mutT 497399..497797 (-) 399 WP_208171869.1 8-oxo-dGTP diphosphatase MutT -
  OLL83_RS02330 (OLL83_000466) yacG 497797..498009 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  OLL83_RS02335 (OLL83_000467) zapD 498054..498794 (-) 741 WP_028779562.1 cell division protein ZapD -
  OLL83_RS02340 (OLL83_000468) coaE 498791..499402 (-) 612 WP_054744929.1 dephospho-CoA kinase -
  OLL83_RS02345 (OLL83_000469) pilD 499403..500317 (-) 915 WP_144191483.1 A24 family peptidase Machinery gene
  OLL83_RS02350 (OLL83_000470) pilC 500387..501652 (-) 1266 WP_054744931.1 type II secretion system F family protein Machinery gene
  OLL83_RS02355 (OLL83_000471) pilB 501805..503511 (-) 1707 WP_156020398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OLL83_RS02360 (OLL83_000472) - 503521..503934 (-) 414 WP_054744933.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OLL83_RS02365 (OLL83_000473) nadC 504792..505652 (-) 861 WP_025012052.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OLL83_RS02370 (OLL83_000474) ampD 505844..506389 (+) 546 WP_145839838.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45730.88 Da        Isoelectric Point: 10.3084

>NTDB_id=754086 OLL83_RS02350 WP_054744931.1 500387..501652(-) (pilC) [Shewanella algae strain B2215466]
MATATATAKNNKAKNKGAKAQPKIHTFTWKGNNRDGKLSSGELRGTSITEIKTLLKSQGINPKTVRKKSASMFGDKKIKP
MDIAVITRQIATMLAAGVPLVTTIELIARGHEKNKVRVLLGTVLADIQAGIPLSDALRPHRAYFDDLYVDLVAAGEHSGS
LDAVFDRIATYREKSEALKSKIKKAMFYPAAVVVVAIAVTVLLLVAVVPQFEEIFKGFGAELPAFTQLIVNISRGLQSTW
YLFLAGIVISVWLFVRAHRNSEHFRNRIDEMVLKIPAIGDILHKGAMARFARTLATTFAAGVPLIDGLESAAGASGNYVY
RKALLNVRTEVMAGMQMNVAMRTTKLFPDMLIQMVMIGEESGSLDNMLNKVANIYEMQVDDAVDGLSSLIEPIMMVVIGT
IVGGLIVGMYLPIFNLGKVVG

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=754086 OLL83_RS02350 WP_054744931.1 500387..501652(-) (pilC) [Shewanella algae strain B2215466]
ATGGCAACCGCAACGGCGACAGCAAAAAACAATAAAGCCAAGAATAAAGGCGCCAAAGCCCAACCCAAGATCCACACCTT
TACCTGGAAGGGGAATAATCGCGACGGCAAACTCAGCTCCGGCGAACTGCGTGGCACCAGCATTACTGAGATAAAAACCC
TGCTTAAAAGCCAAGGGATTAATCCCAAGACGGTACGTAAAAAATCAGCGTCTATGTTTGGCGATAAAAAGATCAAGCCG
ATGGATATCGCGGTGATTACCCGCCAGATAGCCACTATGCTGGCTGCCGGGGTTCCCTTGGTAACAACTATTGAATTGAT
CGCCCGCGGCCATGAAAAAAATAAGGTGCGGGTACTTCTCGGCACTGTGCTAGCCGATATCCAGGCCGGCATCCCGCTGT
CCGATGCTCTTCGCCCCCATAGAGCATACTTCGATGATCTCTACGTCGACTTGGTGGCCGCCGGTGAACATTCAGGTTCC
TTGGATGCCGTATTTGATCGTATCGCCACCTACAGGGAAAAGTCAGAGGCCCTTAAGTCGAAAATTAAGAAAGCCATGTT
TTACCCTGCTGCAGTGGTGGTTGTTGCCATAGCCGTTACCGTGCTGCTGCTTGTTGCCGTTGTACCTCAATTTGAAGAAA
TCTTTAAGGGATTCGGCGCCGAACTGCCTGCCTTTACCCAATTAATTGTCAATATCAGCCGCGGCCTTCAGAGTACCTGG
TATCTATTTCTGGCTGGTATCGTTATCAGTGTCTGGCTGTTTGTCCGTGCTCACCGCAACTCAGAGCACTTCCGTAACCG
TATCGACGAAATGGTGCTTAAGATCCCCGCGATAGGAGATATCTTACATAAAGGTGCTATGGCCCGTTTTGCCCGCACTC
TGGCCACCACTTTTGCCGCCGGGGTGCCGCTGATTGATGGCCTGGAGTCTGCCGCCGGCGCCTCCGGCAACTATGTCTAC
CGCAAGGCGCTGTTGAATGTGCGTACTGAAGTGATGGCCGGGATGCAGATGAACGTGGCCATGCGCACTACCAAGCTATT
CCCCGATATGTTGATCCAGATGGTGATGATAGGTGAAGAATCCGGCTCATTGGATAATATGCTCAACAAAGTCGCCAATA
TCTATGAGATGCAGGTAGACGATGCCGTAGATGGCCTTTCCAGCCTGATAGAACCCATTATGATGGTAGTTATCGGCACC
ATAGTCGGCGGCCTAATCGTCGGCATGTATCTACCTATCTTCAACTTGGGTAAAGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(290-412)

Type II secretion system (T2SS), protein F (T2SSF)

(87-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.887

94.774

0.52
  pilC Acinetobacter baylyi ADP1

49.386

96.675

0.477
  pilC Legionella pneumophila strain ERS1305867

49.01

95.962

0.47
  pilC Acinetobacter baumannii D1279779

47.304

96.912

0.458
  pilC Vibrio cholerae strain A1552

46.883

95.249

0.447
  pilC Vibrio campbellii strain DS40M4

44.913

95.724

0.43
  pilG Neisseria meningitidis 44/76-A

42.029

98.337

0.413
  pilG Neisseria gonorrhoeae MS11

42.029

98.337

0.413