Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OLL83_RS02345 Genome accession   NZ_CP110338
Coordinates   499403..500317 (-) Length   304 a.a.
NCBI ID   WP_144191483.1    Uniprot ID   -
Organism   Shewanella algae strain B2215466     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 494403..505317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL83_RS02325 (OLL83_000465) mutT 497399..497797 (-) 399 WP_208171869.1 8-oxo-dGTP diphosphatase MutT -
  OLL83_RS02330 (OLL83_000466) yacG 497797..498009 (-) 213 WP_025886789.1 DNA gyrase inhibitor YacG -
  OLL83_RS02335 (OLL83_000467) zapD 498054..498794 (-) 741 WP_028779562.1 cell division protein ZapD -
  OLL83_RS02340 (OLL83_000468) coaE 498791..499402 (-) 612 WP_054744929.1 dephospho-CoA kinase -
  OLL83_RS02345 (OLL83_000469) pilD 499403..500317 (-) 915 WP_144191483.1 A24 family peptidase Machinery gene
  OLL83_RS02350 (OLL83_000470) pilC 500387..501652 (-) 1266 WP_054744931.1 type II secretion system F family protein Machinery gene
  OLL83_RS02355 (OLL83_000471) pilB 501805..503511 (-) 1707 WP_156020398.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OLL83_RS02360 (OLL83_000472) - 503521..503934 (-) 414 WP_054744933.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 33805.19 Da        Isoelectric Point: 7.2147

>NTDB_id=754085 OLL83_RS02345 WP_144191483.1 499403..500317(-) (pilD) [Shewanella algae strain B2215466]
MSEFIAVLSHNQWLFLVLCFLFASVIGSFLNVVIHRLPVMMKREWQQECNQYLQEYQPEFAKQLGEAKLNAPIDNYPAKY
NLILPKSACPKCGAHIKPWHNLPIIGYLLLGGKCASCNTAISARYPIFELLTALLISTLGWYLGPTLQFVYATILTFGLI
ALSGIDLDEMLLPDQITLPLLWLGLLVNISGTFTNLTDATIGAAAGYLSLWSVYWLFKLLTGKEGMGYGDFKLMALFGAW
LGWQMLPLIILLSSLVGALVGVLLILFKNLNRGNPIPFGPYIAIAGWVALVWGQQIVDWYLGTL

Nucleotide


Download         Length: 915 bp        

>NTDB_id=754085 OLL83_RS02345 WP_144191483.1 499403..500317(-) (pilD) [Shewanella algae strain B2215466]
ATGTCAGAATTTATTGCCGTATTGAGCCACAACCAGTGGCTCTTTCTTGTTCTCTGTTTTTTGTTTGCCTCAGTAATAGG
CAGCTTTCTCAATGTGGTAATCCATCGCCTGCCGGTAATGATGAAGCGCGAATGGCAGCAGGAATGCAATCAATACCTGC
AGGAATATCAACCCGAATTCGCCAAACAGCTGGGTGAAGCCAAGCTTAATGCACCAATAGATAACTATCCGGCCAAATAC
AATCTGATACTGCCGAAGTCTGCCTGCCCCAAGTGTGGCGCCCATATCAAACCCTGGCACAACCTCCCCATAATCGGCTA
TTTGTTGCTTGGCGGTAAATGCGCCTCCTGCAACACAGCTATTTCAGCGAGATACCCAATATTTGAGCTGCTGACCGCCC
TGCTTATCAGTACGCTCGGTTGGTATTTGGGCCCGACACTGCAGTTTGTTTACGCCACTATTCTCACCTTTGGATTGATA
GCCCTCAGCGGGATAGATTTGGATGAAATGCTGCTGCCGGATCAGATTACCCTGCCGCTACTGTGGCTTGGTTTACTGGT
TAATATCTCGGGCACCTTTACTAATCTGACCGATGCCACCATAGGAGCCGCTGCCGGCTATTTAAGCCTCTGGTCGGTCT
ACTGGCTATTTAAACTGCTCACCGGCAAGGAAGGCATGGGCTATGGCGATTTCAAGCTGATGGCTCTATTCGGCGCCTGG
CTTGGCTGGCAGATGTTACCTCTAATTATTCTGCTCTCTTCTTTGGTGGGCGCCCTGGTAGGCGTTTTACTTATTCTGTT
CAAGAACCTTAATCGGGGTAACCCTATCCCCTTTGGCCCTTATATTGCTATCGCAGGTTGGGTCGCTTTGGTGTGGGGAC
AACAGATTGTCGACTGGTATTTGGGAACACTCTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-141)

Type IV leader peptidase family (Peptidase_A24)

(154-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

48.837

99.013

0.484
  pilD Vibrio cholerae strain A1552

49.658

96.053

0.477
  pilD Acinetobacter nosocomialis M2

47.682

99.342

0.474
  pilD Acinetobacter baumannii D1279779

47.351

99.342

0.47
  pilD Neisseria gonorrhoeae MS11

45.196

92.434

0.418