Detailed information NTG0075367

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: UKS_RS07270
• Genome accession: NZ_AP021887
• Coordinates: 1431024..1431494 (-)
• Length: 156 a.a.
• NCBI ID: WP_000609604.1
• Uniprot ID: I2J9A3
• Organism: Streptococcus sp. 116-D4
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1426024..1436494

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UKS_RS07235 (UKS_13930)	-	1426056..1426991 (-)	936	WP_049496653.1	manganese-dependent inorganic pyrophosphatase	-
UKS_RS07240 (UKS_13940)	-	1427077..1427361 (-)	285	WP_049496654.1	GIY-YIG nuclease family protein	-
UKS_RS07245 (UKS_13950)	-	1427351..1428100 (-)	750	WP_049496655.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
UKS_RS07250 (UKS_13960)	-	1428153..1428515 (-)	363	WP_156012370.1	S1 RNA-binding domain-containing protein	-
UKS_RS07255 (UKS_13970)	-	1428517..1429917 (-)	1401	WP_156012372.1	bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase	-
UKS_RS07260 (UKS_13980)	-	1429998..1430501 (-)	504	WP_049496662.1	GNAT family N-acetyltransferase	-
UKS_RS07265 (UKS_13990)	rpsR	1430752..1430991 (-)	240	WP_000068664.1	30S ribosomal protein S18	-
UKS_RS07270 (UKS_14000)	ssbA	1431024..1431494 (-)	471	WP_000609604.1	single-stranded DNA-binding protein SsbA	Machinery gene
UKS_RS07275 (UKS_14010)	rpsF	1431506..1431796 (-)	291	WP_001151784.1	30S ribosomal protein S6	-
UKS_RS07280 (UKS_14020)	asnS	1431949..1433295 (-)	1347	WP_173020497.1	asparagine--tRNA ligase	-
UKS_RS07285 (UKS_14030)	-	1433315..1434493 (-)	1179	WP_156012376.1	pyridoxal phosphate-dependent aminotransferase	-
UKS_RS07290 (UKS_14040)	-	1434490..1434978 (-)	489	WP_173020474.1	DUF5590 domain-containing protein	-
UKS_RS07295 (UKS_14050)	-	1435233..1435781 (+)	549	WP_156012378.1	NADPH-dependent FMN reductase	-

Sequence

Protein

• Length: 156 a.a.
• Molecular weight: 17398.22 Da
• Isoelectric Point: 4.9164

>NTDB_id=75367 UKS_RS07270 WP_000609604.1 1431024..1431494(-) (ssbA) [Streptococcus sp. 116-D4]
MINNVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINVVMWRQQAENLANWAKKGSLIGVTGRIQTR
SYDNQQGQRVYVTEVVAENFQMLESRSVREGHTGGAYSAPSSNYSAPTQSVPDFSRDENPFGTTNPLDISDDDLPF

Nucleotide

• Length: 471 bp

>NTDB_id=75367 UKS_RS07270 WP_000609604.1 1431024..1431494(-) (ssbA) [Streptococcus sp. 116-D4]
ATGATTAACAATGTTGTACTTGTAGGGCGTATGACACGTGATGCTGAATTACGTTATACCCCATCAAATGTAGCAGTTGC
GACTTTTACTCTTGCAGTAAACCGTACATTTAAGAGTCAAAATGGCGAACGTGAGGCTGATTTTATCAATGTCGTTATGT
GGCGCCAACAGGCTGAAAATCTTGCTAATTGGGCTAAAAAAGGCTCACTTATCGGGGTAACAGGCCGTATTCAGACTCGT
AGTTACGATAACCAGCAAGGACAACGTGTCTACGTGACGGAAGTCGTGGCTGAGAATTTCCAAATGTTGGAAAGCCGTAG
TGTGCGTGAAGGACATACAGGTGGAGCTTATTCTGCACCAAGTTCAAACTATTCAGCCCCTACTCAATCAGTGCCTGACT
TTTCACGTGATGAAAATCCATTTGGAACAACAAATCCTTTGGATATTTCAGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

3D structure

• AlphaFold DB: I2J9A3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	55.233	100	0.609
ssb	Latilactobacillus sakei subsp. sakei 23K	54.706	100	0.596
ssbB/cilA	Streptococcus pneumoniae TIGR4	51.282	75	0.385
ssbB	Bacillus subtilis subsp. subtilis str. 168	55.66	67.949	0.378
ssbB/cilA	Streptococcus pneumoniae R6	50.427	75	0.378
ssbB/cilA	Streptococcus mitis SK321	50.427	75	0.378
ssbB/cilA	Streptococcus mitis NCTC 12261	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae Rx1	50.427	75	0.378
ssbB/cilA	Streptococcus pneumoniae D39	50.427	75	0.378
ssbB	Streptococcus sobrinus strain NIDR 6715-7	54.128	69.872	0.378