Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OH720_RS27355 Genome accession   NZ_CP110128
Coordinates   6091948..6093165 (+) Length   405 a.a.
NCBI ID   WP_272603581.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6086948..6098165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS27340 (OH720_27350) - 6087358..6090318 (+) 2961 WP_272603578.1 DUF748 domain-containing protein -
  OH720_RS27345 (OH720_27355) - 6090554..6090907 (-) 354 WP_272603579.1 BON domain-containing protein -
  OH720_RS27350 (OH720_27360) - 6091218..6091637 (-) 420 WP_272603580.1 pilin -
  OH720_RS27355 (OH720_27365) pilC 6091948..6093165 (+) 1218 WP_272603581.1 type II secretion system F family protein Machinery gene
  OH720_RS27360 (OH720_27370) pilD 6093167..6094039 (+) 873 WP_272603582.1 A24 family peptidase Machinery gene
  OH720_RS27365 (OH720_27375) coaE 6094036..6094659 (+) 624 WP_272603583.1 dephospho-CoA kinase -
  OH720_RS27370 (OH720_27380) yacG 6094656..6094856 (+) 201 WP_060543361.1 DNA gyrase inhibitor YacG -
  OH720_RS27375 (OH720_27385) - 6095088..6095648 (+) 561 WP_008058360.1 hypothetical protein -
  OH720_RS27380 (OH720_27390) - 6095670..6095987 (-) 318 WP_032831537.1 cytochrome C oxidase subunit IV family protein -
  OH720_RS27385 (OH720_27395) - 6096001..6096705 (-) 705 WP_272603584.1 heme-copper oxidase subunit III family protein -
  OH720_RS27390 (OH720_27400) - 6096712..6097404 (-) 693 WP_272603585.1 cytochrome c oxidase subunit 3 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44236.13 Da        Isoelectric Point: 10.0608

>NTDB_id=752540 OH720_RS27355 WP_272603581.1 6091948..6093165(+) (pilC) [Pseudomonas sp. WJP1]
MAVKAARTSVYTWEGTDRKGTKVTGELSGQNPALIKAQLRKQGINPGKVRRKTTSIFNLGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQAGALDTLLERVATYKEKS
ESLKAKIKKAITYPLIVVCVAIIVTGILLIKVVPQFESVFKGFGAELPGFTLLVIDLSQFMQAWWWMLLGALIAAALAVR
RALKTSQGFRDRMDTWLLKLPLIGTLMYKSAVARFARTLSTTFAAGVPLVEALESVAGATGNIVFKRAVLRIRQDVATGM
QLNFSMRTSGVFPNMAVQMTAIGEESGALDDMLNKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=752540 OH720_RS27355 WP_272603581.1 6091948..6093165(+) (pilC) [Pseudomonas sp. WJP1]
ATGGCAGTCAAGGCAGCAAGAACCAGCGTGTACACCTGGGAAGGTACAGACAGGAAAGGCACGAAGGTGACGGGCGAGTT
GAGCGGTCAAAACCCGGCGCTGATCAAGGCGCAATTGCGCAAGCAAGGCATCAATCCCGGCAAGGTGCGCAGGAAAACCA
CGTCGATTTTCAACCTGGGTAAACGCATCAAGGCCCAGGACATTGCCCTTTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGTTGTTGCAGTCGTTCGACATCATCGGTGAAGGCTTCGACAACCCGGCCATGCGCAAGCTGGTCGATGA
GGTGAAGCAGGAAGTGGCAGCGGGCAACAGCTTCGCCGCGGCCCTGCGCAAAAAACCGCAATACTTCGATGAGCTGTACT
GCAACCTGGTGGACGCCGGGGAGCAGGCCGGCGCGCTGGACACCCTGCTGGAACGGGTGGCGACCTACAAGGAAAAAAGC
GAAAGCCTCAAGGCGAAGATCAAGAAAGCCATAACCTACCCGCTGATCGTCGTGTGTGTCGCGATCATCGTGACCGGCAT
CCTGCTGATCAAGGTGGTGCCGCAATTCGAATCGGTGTTCAAGGGCTTTGGTGCTGAATTGCCAGGCTTCACCTTGCTGG
TCATCGACCTGTCGCAGTTCATGCAAGCGTGGTGGTGGATGTTGCTGGGCGCACTCATTGCGGCTGCTCTGGCTGTGCGC
CGCGCCCTGAAAACCTCGCAAGGTTTTCGCGACCGAATGGACACCTGGCTGCTGAAACTGCCGTTGATAGGCACCTTGAT
GTACAAGTCCGCGGTGGCCCGTTTCGCCCGCACGCTGTCGACGACCTTCGCCGCCGGCGTACCGCTGGTCGAAGCCCTGG
AGTCCGTGGCCGGCGCCACCGGCAATATCGTGTTCAAACGCGCGGTGTTGCGCATCCGGCAGGACGTTGCGACCGGCATG
CAGCTGAATTTTTCCATGCGCACTTCCGGTGTTTTCCCGAACATGGCCGTGCAGATGACCGCCATTGGCGAGGAGTCTGG
CGCACTCGACGACATGCTCAACAAGGTCGCCGGTTTCTACGAGGACGAGGTCGACAATATGGTCGACAACCTCACAAGCC
TCATGGAACCGTTCATCATGGTGGTGCTGGGTGTTATTGTCGGCGGCCTGGTGGTCGCGATGTACCTGCCCATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

72.593

100

0.726
  pilC Acinetobacter baylyi ADP1

58.333

100

0.588
  pilC Acinetobacter baumannii D1279779

57.843

100

0.583
  pilC Legionella pneumophila strain ERS1305867

54.04

97.778

0.528
  pilG Neisseria meningitidis 44/76-A

44.198

100

0.442
  pilG Neisseria gonorrhoeae MS11

44.279

99.259

0.44
  pilC Vibrio cholerae strain A1552

43.719

98.272

0.43
  pilC Vibrio campbellii strain DS40M4

41.414

97.778

0.405
  pilC Thermus thermophilus HB27

39.599

98.519

0.39