Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OH720_RS27360 Genome accession   NZ_CP110128
Coordinates   6093167..6094039 (+) Length   290 a.a.
NCBI ID   WP_272603582.1    Uniprot ID   -
Organism   Pseudomonas sp. WJP1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6088167..6099039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OH720_RS27345 (OH720_27355) - 6090554..6090907 (-) 354 WP_272603579.1 BON domain-containing protein -
  OH720_RS27350 (OH720_27360) - 6091218..6091637 (-) 420 WP_272603580.1 pilin -
  OH720_RS27355 (OH720_27365) pilC 6091948..6093165 (+) 1218 WP_272603581.1 type II secretion system F family protein Machinery gene
  OH720_RS27360 (OH720_27370) pilD 6093167..6094039 (+) 873 WP_272603582.1 A24 family peptidase Machinery gene
  OH720_RS27365 (OH720_27375) coaE 6094036..6094659 (+) 624 WP_272603583.1 dephospho-CoA kinase -
  OH720_RS27370 (OH720_27380) yacG 6094656..6094856 (+) 201 WP_060543361.1 DNA gyrase inhibitor YacG -
  OH720_RS27375 (OH720_27385) - 6095088..6095648 (+) 561 WP_008058360.1 hypothetical protein -
  OH720_RS27380 (OH720_27390) - 6095670..6095987 (-) 318 WP_032831537.1 cytochrome C oxidase subunit IV family protein -
  OH720_RS27385 (OH720_27395) - 6096001..6096705 (-) 705 WP_272603584.1 heme-copper oxidase subunit III family protein -
  OH720_RS27390 (OH720_27400) - 6096712..6097404 (-) 693 WP_272603585.1 cytochrome c oxidase subunit 3 -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32311.59 Da        Isoelectric Point: 8.0699

>NTDB_id=752541 OH720_RS27360 WP_272603582.1 6093167..6094039(+) (pilD) [Pseudomonas sp. WJP1]
MPLNEILTHFPLAFVVIAGVVGLLVGSFLNVLVWRLPKMLERDWRVQAHEILGLPGETPLPTYNLLLPHSQCTHCGHRIR
AWENIPVFSFLFLRGRCSACATPISKRYPLTELACALLSAFIAWHFGFGWQAGLAMLLTWGLLAMSLIDAEHQLLPDVLV
LPLMWLGLIVNSLDLFVTLPEALWGAIAGYMALWTVFWVFKLLTGKDGMGHGDFKLLAMFGAWGGWQILPLTIVLSSLVG
AIIGVFYLRLRKAQTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK

Nucleotide


Download         Length: 873 bp        

>NTDB_id=752541 OH720_RS27360 WP_272603582.1 6093167..6094039(+) (pilD) [Pseudomonas sp. WJP1]
ATGCCCTTGAACGAAATTCTGACCCACTTCCCGCTGGCTTTCGTCGTCATCGCCGGGGTAGTCGGCCTGCTGGTTGGCAG
CTTCCTTAATGTACTGGTGTGGCGCCTGCCGAAAATGCTCGAGCGCGACTGGCGCGTGCAGGCCCATGAGATTCTCGGAT
TGCCCGGTGAAACGCCGTTGCCGACCTACAATCTGCTGCTGCCGCACTCCCAGTGCACGCATTGCGGCCACCGGATTCGT
GCCTGGGAAAACATTCCAGTGTTCAGCTTCCTGTTCCTGCGCGGGCGCTGCTCGGCCTGCGCGACGCCGATCAGCAAACG
CTATCCATTGACCGAGCTGGCCTGCGCCCTCCTGTCGGCGTTCATTGCCTGGCACTTCGGTTTCGGCTGGCAAGCCGGCC
TGGCGATGCTCCTGACCTGGGGCTTGCTGGCCATGAGCCTGATCGACGCCGAGCATCAACTGCTGCCGGATGTACTGGTG
CTGCCGCTGATGTGGCTGGGGCTGATCGTCAACAGCCTCGACTTGTTCGTGACATTGCCCGAGGCATTGTGGGGCGCCAT
TGCCGGCTACATGGCGCTGTGGACGGTGTTCTGGGTGTTCAAGCTGCTCACCGGCAAGGATGGAATGGGGCATGGCGATT
TCAAGCTGCTGGCGATGTTTGGCGCCTGGGGCGGTTGGCAGATCCTGCCACTGACGATCGTCCTGTCATCCCTGGTGGGC
GCGATCATCGGTGTGTTTTACCTGCGCCTGCGCAAGGCACAAACATCGACACCCATCCCTTTCGGCCCCTATCTCGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTCTGAAATGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio campbellii strain DS40M4

50.709

97.241

0.493
  pilD Vibrio cholerae strain A1552

50.709

97.241

0.493
  pilD Acinetobacter baumannii D1279779

46.35

94.483

0.438
  pilD Neisseria gonorrhoeae MS11

48.837

88.966

0.434
  pilD Acinetobacter nosocomialis M2

45.62

94.483

0.431