Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   D3P44_RS16540 Genome accession   NZ_CP110110
Coordinates   3473051..3474271 (-) Length   406 a.a.
NCBI ID   WP_061340859.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain Z8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3468051..3479271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3P44_RS16505 (D3P44_016505) petA 3468535..3469128 (-) 594 WP_041104007.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  D3P44_RS16510 (D3P44_016510) rpsI 3469383..3469775 (-) 393 WP_043221690.1 30S ribosomal protein S9 -
  D3P44_RS16515 (D3P44_016515) rplM 3469790..3470218 (-) 429 WP_041104003.1 50S ribosomal protein L13 -
  D3P44_RS16520 (D3P44_016520) - 3470585..3471295 (+) 711 WP_043221692.1 energy-coupling factor ABC transporter permease -
  D3P44_RS16525 (D3P44_016525) yacG 3471289..3471486 (-) 198 WP_074519929.1 DNA gyrase inhibitor YacG -
  D3P44_RS16530 (D3P44_016530) coaE 3471483..3472091 (-) 609 WP_212542969.1 dephospho-CoA kinase -
  D3P44_RS16535 (D3P44_016535) pilD 3472185..3473054 (-) 870 WP_212542968.1 prepilin peptidase Machinery gene
  D3P44_RS16540 (D3P44_016540) pilC 3473051..3474271 (-) 1221 WP_061340859.1 type II secretion system F family protein Machinery gene
  D3P44_RS16545 (D3P44_016545) pilB 3474274..3475977 (-) 1704 WP_212542967.1 type IV-A pilus assembly ATPase PilB Machinery gene
  D3P44_RS20940 - 3476400..3476585 (+) 186 WP_212542966.1 type IV pilin protein -
  D3P44_RS16555 (D3P44_016555) - 3476605..3477006 (+) 402 WP_212542965.1 hypothetical protein -
  D3P44_RS16560 (D3P44_016560) - 3477152..3478168 (+) 1017 WP_032728035.1 IS30-like element IS1394 family transposase -
  D3P44_RS16565 (D3P44_016565) - 3478526..3479230 (+) 705 WP_249345724.1 ABC transporter permease subunit -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44239.07 Da        Isoelectric Point: 9.6834

>NTDB_id=752426 D3P44_RS16540 WP_061340859.1 3473051..3474271(-) (pilC) [Stutzerimonas balearica strain Z8]
MAEKALKTSVFTWEGTDRKGGKVKGELAGQSPALVKAQLRKQGINPLKVRKKAVSLFGSGKKIKPMDIALFTRQMATMMK
AGVPLLQAFDIIGEGFDNPNMRKMVDEVKQEVAAGNSFAGSLRKKPQYFDDLYCNLVESGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAVIVSAILLIKVVPQFESVFEGFGAELPAFTQMVVGLSRWLQEWWYLVLFAAFIAALVFK
QAYQKSEKFRDGLDRAMLKTPIVGDIVYKSVVARYARTLATTFAAGVPLVDALESVEGATGNVVFRRAVAKIRADVSAGV
QLNFSMRTTGVFPTMAVQMAAIGEEAGSLDEMLDKLASFYEAEVDNMVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=752426 D3P44_RS16540 WP_061340859.1 3473051..3474271(-) (pilC) [Stutzerimonas balearica strain Z8]
ATGGCGGAAAAAGCGTTGAAAACCAGCGTGTTCACCTGGGAAGGAACCGACAGGAAAGGCGGCAAGGTCAAGGGTGAGCT
CGCTGGGCAAAGCCCGGCTTTGGTCAAGGCGCAACTGCGTAAGCAGGGCATCAATCCGCTCAAGGTTCGCAAGAAAGCGG
TGTCCCTGTTCGGCTCCGGTAAAAAGATCAAGCCGATGGACATCGCTCTGTTCACTCGGCAAATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGCTGCAGGCTTTCGACATCATTGGCGAGGGCTTCGACAACCCCAACATGCGCAAGATGGTCGATGA
GGTGAAGCAGGAAGTCGCTGCCGGTAACAGCTTCGCTGGTTCGCTGCGCAAGAAGCCGCAGTATTTCGACGATCTGTATT
GCAACCTGGTCGAGTCCGGGGAGCAATCGGGTGCCTTGGAGACGCTGCTGGATCGCGTGGCGACCTACAAGGAAAAAACC
GAAGCGCTGAAGGCGAAGATCAAAAAGGCGATGACCTATCCAATCGCGGTAATCGTCGTGGCGGTCATTGTGTCGGCGAT
CCTGCTGATCAAGGTCGTTCCGCAGTTCGAGAGCGTCTTCGAGGGTTTTGGTGCTGAGTTGCCGGCCTTTACCCAGATGG
TGGTCGGGCTGTCGCGCTGGCTGCAGGAGTGGTGGTATCTGGTTCTGTTCGCTGCCTTCATCGCGGCGCTGGTATTCAAG
CAGGCATACCAGAAGTCGGAAAAATTCCGGGACGGATTGGATCGGGCGATGCTGAAAACGCCGATCGTAGGCGACATCGT
ATATAAGTCGGTAGTCGCTCGTTATGCGCGGACCCTTGCTACGACCTTTGCAGCGGGCGTTCCGTTGGTCGATGCGCTGG
AGTCGGTGGAGGGGGCGACGGGAAACGTGGTATTTCGGCGCGCCGTGGCAAAGATCCGCGCGGATGTCTCGGCAGGTGTG
CAGCTCAATTTTTCCATGCGTACCACGGGGGTATTCCCAACGATGGCGGTACAAATGGCTGCCATTGGTGAGGAGGCGGG
GTCGCTCGATGAAATGCTCGACAAGCTGGCCAGCTTCTATGAGGCGGAAGTCGACAACATGGTAGACAACCTGACCACGC
TAATGGAGCCGATGATCATGGCTGTTCTTGGGGTCCTGGTTGGCGGCCTGATCATTGCCATGTATCTGCCGATTTTCCAG
CTAGGTTCAGTCGTCGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.235

99.754

0.81
  pilC Acinetobacter baylyi ADP1

61.823

100

0.618
  pilC Acinetobacter baumannii D1279779

60.741

99.754

0.606
  pilC Legionella pneumophila strain ERS1305867

52.02

97.537

0.507
  pilG Neisseria gonorrhoeae MS11

45.274

99.015

0.448
  pilG Neisseria meningitidis 44/76-A

45.274

99.015

0.448
  pilC Vibrio cholerae strain A1552

42.365

100

0.424
  pilC Vibrio campbellii strain DS40M4

41.96

98.03

0.411