Detailed information NTG0752425

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: D3P44_RS16535
• Genome accession: NZ_CP110110
• Coordinates: 3472185..3473054 (-)
• Length: 289 a.a.
• NCBI ID: WP_212542968.1
• Uniprot ID: -
• Organism: Stutzerimonas balearica strain Z8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3467185..3478054

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D3P44_RS16500 (D3P44_016500)	-	3467324..3468535 (-)	1212	WP_212542970.1	cytochrome b	-
D3P44_RS16505 (D3P44_016505)	petA	3468535..3469128 (-)	594	WP_041104007.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
D3P44_RS16510 (D3P44_016510)	rpsI	3469383..3469775 (-)	393	WP_043221690.1	30S ribosomal protein S9	-
D3P44_RS16515 (D3P44_016515)	rplM	3469790..3470218 (-)	429	WP_041104003.1	50S ribosomal protein L13	-
D3P44_RS16520 (D3P44_016520)	-	3470585..3471295 (+)	711	WP_043221692.1	energy-coupling factor ABC transporter permease	-
D3P44_RS16525 (D3P44_016525)	yacG	3471289..3471486 (-)	198	WP_074519929.1	DNA gyrase inhibitor YacG	-
D3P44_RS16530 (D3P44_016530)	coaE	3471483..3472091 (-)	609	WP_212542969.1	dephospho-CoA kinase	-
D3P44_RS16535 (D3P44_016535)	pilD	3472185..3473054 (-)	870	WP_212542968.1	prepilin peptidase	Machinery gene
D3P44_RS16540 (D3P44_016540)	pilC	3473051..3474271 (-)	1221	WP_061340859.1	type II secretion system F family protein	Machinery gene
D3P44_RS16545 (D3P44_016545)	pilB	3474274..3475977 (-)	1704	WP_212542967.1	type IV-A pilus assembly ATPase PilB	Machinery gene
D3P44_RS20940	-	3476400..3476585 (+)	186	WP_212542966.1	type IV pilin protein	-
D3P44_RS16555 (D3P44_016555)	-	3476605..3477006 (+)	402	WP_212542965.1	hypothetical protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31898.77 Da
• Isoelectric Point: 7.6627

>NTDB_id=752425 D3P44_RS16535 WP_212542968.1 3472185..3473054(-) (pilD) [Stutzerimonas balearica strain Z8]
MTAMSYLASHELAFVLSAALLGLLVGSFLNVLIYRLPVMMQREWREQAREYLSLEPEPVGPRFNLLLPASSCPHCGHSIR
AWENVPLVSWVLLRGRCSACRTGISVRYPLVELACALLSGFTAWHFGFTWQSGAILLLGWGLLAMSMIDIDHQLLPDSLV
LPLLWFGLICNHFGLFVALGDALWGAVFGYLSLWAVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVIGTISLRWRNAAAGTPIPFGPYLAIAGWIALVWGQQITDRYLQLAGF

Nucleotide

• Length: 870 bp

>NTDB_id=752425 D3P44_RS16535 WP_212542968.1 3472185..3473054(-) (pilD) [Stutzerimonas balearica strain Z8]
ATGACTGCGATGAGCTATCTGGCCAGCCACGAGCTGGCCTTTGTTTTGTCTGCGGCTTTGCTTGGATTGCTGGTTGGCAG
CTTTCTCAATGTGCTGATTTATCGGCTGCCGGTGATGATGCAGCGGGAATGGCGCGAGCAGGCGAGGGAGTACCTTTCGC
TCGAGCCTGAGCCTGTCGGGCCGCGATTCAACCTTTTGCTGCCTGCTTCTTCCTGTCCGCACTGTGGCCACTCTATTCGT
GCCTGGGAGAACGTCCCTCTGGTGAGCTGGGTGCTGCTGCGAGGGCGCTGTTCGGCATGTCGAACAGGTATCAGTGTCCG
TTATCCGTTGGTGGAGCTGGCCTGTGCGCTCCTTTCGGGGTTCACCGCCTGGCACTTCGGCTTCACCTGGCAATCCGGTG
CGATCCTGCTGTTGGGCTGGGGGCTGCTGGCCATGAGCATGATCGATATCGATCACCAATTGCTGCCCGACTCGCTCGTG
CTGCCTCTTCTCTGGTTCGGCCTGATCTGCAACCATTTCGGCCTATTCGTTGCGCTCGGCGATGCGCTTTGGGGAGCTGT
CTTCGGCTACCTCAGCCTGTGGGCGGTGTACTGGCTATTCAAGCTCGTCACTGGCAAGGAAGGCATGGGCTACGGTGACT
TCAAGCTTCTTGCGATGATAGGGGCGTGGGGGGGATGGCAGGTGCTGCCGCTAACCATCCTCCTGTCATCGCTGGTCGGC
GCCGTAATCGGCACGATTTCACTGCGATGGCGGAATGCGGCTGCCGGCACGCCTATCCCGTTCGGCCCGTACCTGGCGAT
CGCCGGCTGGATCGCGCTGGTGTGGGGGCAGCAGATCACCGATCGCTATCTGCAGCTTGCCGGCTTCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.212	94.464	0.512
pilD	Vibrio campbellii strain DS40M4	53.114	94.464	0.502
pilD	Acinetobacter baumannii D1279779	48.763	97.924	0.478
pilD	Acinetobacter nosocomialis M2	48.763	97.924	0.478
pilD	Neisseria gonorrhoeae MS11	50.19	91.003	0.457