Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   A6764_RS11170 Genome accession   NZ_CP109943
Coordinates   2253800..2255041 (+) Length   413 a.a.
NCBI ID   WP_264622227.1    Uniprot ID   -
Organism   Brevibacillus sp. WF146     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2248800..2260041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6764_RS11145 (A6764_11145) - 2249532..2249801 (+) 270 WP_029099025.1 DUF3243 domain-containing protein -
  A6764_RS11150 (A6764_11150) - 2249924..2250703 (+) 780 WP_029099026.1 DUF3388 domain-containing protein -
  A6764_RS11155 (A6764_11155) - 2250716..2251621 (+) 906 WP_044898227.1 helix-turn-helix domain-containing protein -
  A6764_RS11160 (A6764_11160) rimO 2251734..2253080 (+) 1347 WP_065066501.1 30S ribosomal protein S12 methylthiotransferase RimO -
  A6764_RS11165 (A6764_11165) pgsA 2253081..2253656 (+) 576 WP_029099029.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A6764_RS11170 (A6764_11170) cinA 2253800..2255041 (+) 1242 WP_264622227.1 competence/damage-inducible protein A Machinery gene
  A6764_RS11175 (A6764_11175) - 2255048..2256634 (+) 1587 WP_029099031.1 DEAD/DEAH box helicase -
  A6764_RS11180 (A6764_11180) recA 2256795..2257853 (+) 1059 WP_029099032.1 recombinase RecA Machinery gene
  A6764_RS11185 (A6764_11185) - 2257962..2258603 (+) 642 WP_065066500.1 regulatory protein RecX -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44752.19 Da        Isoelectric Point: 5.5645

>NTDB_id=751133 A6764_RS11170 WP_264622227.1 2253800..2255041(+) (cinA) [Brevibacillus sp. WF146]
MRAEIIAVGTELLLGQIANTNAQYLSQKLAEIGVGVYFHTVVGDNAERLASVIRQASARSDLIVFTGGLGPTQDDLTKET
VAEHLGVGLTTDQAAMERIESFFRQRGITMTENNRKQALVLAGSRVFPNDHGMAPGMAAQRDGRTYVLLPGPPSELYPMV
EKYVMPYLIGLKPEQQVFHSRVLRFYGIGESALEERLLDLIERQDNPTIAPYAKEFEVTLRITARAANVDDAERLIQPVE
REIRERLGEYIYVTGETSLHEVLVDELKRRGATIACAESCTGGTAASLITSVPGSSAVMRGGVVCYTNEAKRQLLNVPEE
VLAGEGAISETTARLLAENVRTTLGADVGISVTGVAGPDSSEGKPVGLVYVGVAVEGLPTLVKELRLAGRRQAIVGRAAK
FALFYALQRLKER

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=751133 A6764_RS11170 WP_264622227.1 2253800..2255041(+) (cinA) [Brevibacillus sp. WF146]
ATGAGAGCGGAGATTATCGCGGTGGGAACGGAACTTTTGCTTGGGCAGATCGCCAATACGAACGCCCAGTATCTCTCCCA
GAAGCTGGCGGAAATCGGCGTTGGCGTCTATTTCCACACGGTGGTGGGGGATAATGCCGAACGGCTGGCAAGCGTGATCC
GCCAGGCGTCGGCCCGGTCCGATCTGATCGTGTTCACCGGCGGACTGGGACCGACCCAGGACGACTTGACGAAAGAAACC
GTGGCGGAGCACCTGGGCGTCGGGTTGACCACCGATCAGGCGGCGATGGAGCGGATCGAGTCGTTTTTTCGCCAGCGGGG
CATCACGATGACGGAGAACAACCGCAAGCAGGCGCTGGTGCTGGCGGGCAGCCGCGTCTTCCCGAACGATCACGGCATGG
CGCCCGGCATGGCGGCGCAGCGCGACGGACGCACCTACGTGCTGCTGCCGGGGCCGCCCAGCGAACTGTACCCGATGGTG
GAGAAATACGTGATGCCGTATCTGATTGGGCTGAAGCCGGAGCAGCAGGTGTTTCACTCGCGCGTGCTGCGCTTCTACGG
CATTGGCGAATCGGCGCTGGAGGAACGGCTGCTCGACCTGATCGAACGGCAGGACAACCCGACGATCGCCCCGTACGCCA
AGGAGTTTGAAGTGACGCTGCGGATCACGGCCAGGGCGGCGAACGTGGACGATGCGGAGCGGCTGATTCAGCCCGTGGAG
AGGGAGATTCGCGAGCGGTTGGGCGAGTACATCTACGTGACGGGAGAGACGTCGCTGCACGAGGTGCTGGTGGACGAACT
GAAGCGCAGGGGCGCGACGATCGCCTGCGCGGAGAGCTGCACCGGGGGAACGGCCGCCTCCCTCATTACATCCGTACCCG
GCAGTTCCGCCGTCATGCGCGGCGGAGTGGTGTGCTATACCAACGAGGCGAAGCGGCAGCTGCTCAACGTGCCGGAGGAA
GTCCTGGCAGGGGAAGGGGCCATCAGCGAGACGACGGCCCGGCTGCTTGCCGAAAACGTCAGGACGACGCTCGGCGCGGA
CGTCGGCATCTCCGTGACGGGGGTGGCCGGCCCTGATTCCTCTGAAGGCAAACCGGTGGGATTGGTCTACGTCGGCGTCG
CCGTGGAAGGGCTGCCCACGCTGGTCAAGGAGCTTCGCCTCGCCGGACGACGACAGGCCATCGTCGGCCGGGCGGCCAAA
TTTGCGCTGTTTTACGCGCTGCAACGACTAAAAGAAAGGTGA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.971

99.758

0.508
  cinA Streptococcus mitis NCTC 12261

47.494

100

0.482
  cinA Streptococcus pneumoniae TIGR4

47.255

100

0.479
  cinA Streptococcus pneumoniae Rx1

47.017

100

0.477
  cinA Streptococcus mitis SK321

47.017

100

0.477
  cinA Streptococcus pneumoniae R6

47.017

100

0.477
  cinA Streptococcus pneumoniae D39

46.778

100

0.475
  cinA Streptococcus mutans UA159

47.87

96.61

0.462
  cinA Streptococcus suis isolate S10

41.266

95.642

0.395