Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OK026_RS17110 Genome accession   NZ_CP109905
Coordinates   3723125..3724348 (+) Length   407 a.a.
NCBI ID   WP_194427605.1    Uniprot ID   -
Organism   Chromobacterium haemolyticum strain UGAL515B_03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3718125..3729348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OK026_RS17100 (OK026_17125) - 3719836..3720984 (+) 1149 WP_194427604.1 porin -
  OK026_RS17105 (OK026_17130) pilF 3721206..3722912 (+) 1707 WP_114153189.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OK026_RS17110 (OK026_17135) pilC 3723125..3724348 (+) 1224 WP_194427605.1 type II secretion system F family protein Machinery gene
  OK026_RS17115 (OK026_17140) pilD 3724345..3725214 (+) 870 WP_194427606.1 A24 family peptidase Machinery gene
  OK026_RS17120 (OK026_17145) coaE 3725204..3725815 (+) 612 WP_081555553.1 dephospho-CoA kinase -
  OK026_RS17125 (OK026_17150) zapD 3725854..3726612 (+) 759 WP_019100891.1 cell division protein ZapD -
  OK026_RS17130 (OK026_17155) yacG 3726650..3726838 (+) 189 WP_043591348.1 DNA gyrase inhibitor YacG -
  OK026_RS17135 (OK026_17160) - 3726903..3728144 (-) 1242 WP_019100893.1 N-acetylmuramoyl-L-alanine amidase -
  OK026_RS17140 (OK026_17165) tsaE 3728105..3728590 (-) 486 WP_370551756.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44705.56 Da        Isoelectric Point: 9.9985

>NTDB_id=750503 OK026_RS17110 WP_194427605.1 3723125..3724348(+) (pilC) [Chromobacterium haemolyticum strain UGAL515B_03]
MAVTVAKKATPGFVWEWEGKDKAGKAIRGELRAESEAVAKTQLRRQGINVVKIKRRRGGFGKRITERDITLFTRQLATMM
RAGVPLLQAFDIAAKGHNNPAVTKMLLEVRADVETGLSLAESFRKRPLYFDKLFCNIIAAGETGGVLDSLLDKLATYKEK
VMAIKGKIKSALIYPSAIVGTAFIITAVIMIYVIPAFKDLFSSFGANLPAPTLFVIWLSDGFVHYWWLIFGVIFGSLFGF
LYAFKRTPKLQEQMDRILLRLPVIGDIIRKATIARWARTLSTLFAAGVPLVEALDSVGGASGNQVYADATKRIQNDVSTG
SSLNYSMQRTDLFPNMVLQMTSIGEESGSLDQMLDKVADFYEEEVDNAVAALSSLLEPAIMVILGVLIGGLIIAMYMPIF
KMGQVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=750503 OK026_RS17110 WP_194427605.1 3723125..3724348(+) (pilC) [Chromobacterium haemolyticum strain UGAL515B_03]
ATGGCAGTCACGGTAGCAAAAAAAGCGACGCCGGGCTTTGTCTGGGAATGGGAAGGCAAGGACAAGGCGGGTAAGGCGAT
ACGCGGGGAGCTGCGAGCGGAGTCCGAGGCGGTGGCCAAGACTCAACTGCGGCGTCAGGGCATCAATGTCGTCAAGATCA
AGCGTCGGCGCGGAGGCTTCGGCAAACGCATCACCGAGCGGGACATCACCTTGTTCACCCGGCAACTGGCGACCATGATG
CGCGCCGGGGTGCCCTTATTGCAGGCTTTCGATATCGCGGCCAAGGGCCACAACAATCCAGCCGTGACCAAGATGCTGCT
GGAGGTGCGCGCCGACGTTGAAACCGGCTTGTCGCTGGCGGAGTCCTTCCGCAAACGTCCCTTGTACTTTGACAAGCTGT
TCTGCAACATCATCGCCGCGGGCGAAACCGGCGGCGTGCTGGACTCCTTGCTGGACAAACTGGCCACTTACAAGGAAAAA
GTGATGGCGATCAAGGGCAAGATCAAGTCGGCCCTGATCTACCCGTCTGCCATTGTCGGCACTGCCTTCATCATTACCGC
CGTAATCATGATTTACGTGATTCCGGCATTCAAGGATTTGTTCTCTAGTTTCGGCGCCAATTTGCCGGCGCCGACGCTGT
TCGTGATCTGGTTGTCGGATGGCTTTGTCCATTACTGGTGGCTGATCTTCGGGGTGATTTTCGGCAGCCTGTTCGGCTTT
CTCTACGCCTTCAAGCGAACGCCCAAGTTGCAAGAGCAGATGGATCGCATCCTGCTGCGCCTGCCGGTGATCGGCGATAT
CATCCGCAAGGCCACTATCGCGCGTTGGGCGCGTACCTTGTCCACCTTGTTCGCCGCCGGGGTGCCGCTAGTGGAAGCGC
TGGATTCGGTGGGCGGCGCCTCCGGCAACCAGGTGTACGCGGATGCCACCAAGCGGATTCAGAACGATGTCAGCACCGGT
TCCAGCCTCAACTATTCGATGCAGCGGACCGACTTGTTCCCTAATATGGTGCTGCAGATGACCTCGATTGGGGAGGAGTC
CGGCTCGCTGGACCAGATGTTGGACAAGGTGGCGGATTTTTACGAAGAAGAAGTCGACAATGCGGTTGCCGCGCTGTCCA
GTTTGCTGGAGCCGGCCATCATGGTGATTCTGGGGGTATTGATCGGTGGTTTGATCATTGCGATGTATATGCCGATTTTC
AAAATGGGGCAGGTGGTTGGATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.208

99.263

0.538
  pilC Pseudomonas stutzeri DSM 10701

53.333

99.509

0.531
  pilG Neisseria gonorrhoeae MS11

52.941

96.069

0.509
  pilG Neisseria meningitidis 44/76-A

52.551

96.314

0.506
  pilC Acinetobacter baylyi ADP1

50.493

99.754

0.504
  pilC Acinetobacter baumannii D1279779

49.136

99.509

0.489
  pilC Vibrio campbellii strain DS40M4

38.847

98.034

0.381
  pilC Vibrio cholerae strain A1552

38.177

99.754

0.381