Detailed information NTG0750504

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OK026_RS17115
• Genome accession: NZ_CP109905
• Coordinates: 3724345..3725214 (+)
• Length: 289 a.a.
• NCBI ID: WP_194427606.1
• Uniprot ID: -
• Organism: Chromobacterium haemolyticum strain UGAL515B_03
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3719345..3730214

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OK026_RS17100 (OK026_17125)	-	3719836..3720984 (+)	1149	WP_194427604.1	porin	-
OK026_RS17105 (OK026_17130)	pilF	3721206..3722912 (+)	1707	WP_114153189.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OK026_RS17110 (OK026_17135)	pilC	3723125..3724348 (+)	1224	WP_194427605.1	type II secretion system F family protein	Machinery gene
OK026_RS17115 (OK026_17140)	pilD	3724345..3725214 (+)	870	WP_194427606.1	A24 family peptidase	Machinery gene
OK026_RS17120 (OK026_17145)	coaE	3725204..3725815 (+)	612	WP_081555553.1	dephospho-CoA kinase	-
OK026_RS17125 (OK026_17150)	zapD	3725854..3726612 (+)	759	WP_019100891.1	cell division protein ZapD	-
OK026_RS17130 (OK026_17155)	yacG	3726650..3726838 (+)	189	WP_043591348.1	DNA gyrase inhibitor YacG	-
OK026_RS17135 (OK026_17160)	-	3726903..3728144 (-)	1242	WP_019100893.1	N-acetylmuramoyl-L-alanine amidase	-
OK026_RS17140 (OK026_17165)	tsaE	3728105..3728590 (-)	486	WP_370551756.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	-
OK026_RS17145 (OK026_17170)	queG	3728595..3729671 (+)	1077	WP_019100895.1	tRNA epoxyqueuosine(34) reductase QueG	-
OK026_RS17150 (OK026_17175)	-	3729675..3730091 (-)	417	WP_019100896.1	MaoC family dehydratase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31848.73 Da
• Isoelectric Point: 6.9224

>NTDB_id=750504 OK026_RS17115 WP_194427606.1 3724345..3725214(+) (pilD) [Chromobacterium haemolyticum strain UGAL515B_03]
MIEEWRWIAGSYPLAFAGAALALGLLVGSFLNVIIHRLPKMLEAEWRRNCVDCLQLEEDETSEPYNLMRPASHCPQCRAA
VRPWQNIPVLSFVLLSGRCGSCRAKIPWRYPVVELSTGLLFAFLAWRFGWSEQLPAYMGLTAVLLALTFIDADTQLLPDN
LTLPLLWGGLLFNLLTGTVPLADAVIGAMAGYLCLWLLFHGFKLATGKEGMGYGDFKLLAALGAWLGWTLLPLVILLSSL
VGAVVGVILILLSKHGRGQPLPFGPYLAAAGWIALIWGQDIVNWYLHAY

Nucleotide

• Length: 870 bp

>NTDB_id=750504 OK026_RS17115 WP_194427606.1 3724345..3725214(+) (pilD) [Chromobacterium haemolyticum strain UGAL515B_03]
ATGATTGAGGAGTGGCGCTGGATCGCCGGCTCGTACCCGCTGGCTTTCGCCGGCGCGGCGCTGGCGCTGGGTTTGTTGGT
TGGCAGTTTTTTGAATGTGATCATTCATCGCTTGCCCAAGATGCTGGAGGCCGAGTGGCGGCGCAATTGCGTTGATTGTC
TGCAGTTGGAAGAGGACGAGACGTCCGAGCCCTACAACTTAATGCGGCCTGCCTCGCACTGCCCGCAATGCCGGGCCGCG
GTGCGTCCGTGGCAGAATATCCCGGTGTTGAGCTTTGTATTGCTGAGCGGACGCTGCGGCAGTTGCCGAGCCAAGATCCC
TTGGCGCTATCCGGTCGTGGAGCTGTCGACCGGGCTGTTGTTCGCTTTCCTGGCCTGGCGTTTCGGCTGGTCGGAACAGC
TGCCGGCCTATATGGGTTTGACCGCGGTGCTGCTGGCCCTGACTTTTATCGACGCGGATACGCAGCTGCTGCCGGACAAC
CTGACTTTGCCCTTGCTGTGGGGGGGCTTGTTATTCAATTTGCTGACCGGCACCGTGCCGCTGGCCGACGCGGTGATAGG
CGCGATGGCGGGCTATCTGTGCCTGTGGTTGCTGTTTCACGGTTTCAAGCTGGCCACCGGCAAGGAGGGCATGGGCTATG
GCGACTTCAAGCTGCTGGCCGCTTTGGGCGCGTGGTTGGGGTGGACTTTGCTGCCCTTGGTGATTTTGCTGTCTTCGCTG
GTGGGGGCAGTGGTGGGCGTGATCTTGATTTTGCTGTCCAAGCACGGACGCGGTCAGCCGCTGCCGTTTGGCCCTTATCT
TGCGGCCGCCGGCTGGATTGCTTTGATCTGGGGGCAGGACATTGTGAATTGGTATTTGCATGCCTATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	53.763	96.54	0.519
pilD	Vibrio cholerae strain A1552	51.773	97.578	0.505
pilD	Neisseria gonorrhoeae MS11	52.399	93.772	0.491
pilD	Acinetobacter baumannii D1279779	49.442	93.08	0.46
pilD	Acinetobacter nosocomialis M2	48.699	93.08	0.453