Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   N8A73_RS08235 Genome accession   NZ_CP109651
Coordinates   1619174..1620424 (+) Length   416 a.a.
NCBI ID   WP_034281899.1    Uniprot ID   -
Organism   Bacillus safensis strain LG01     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1614174..1625424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A73_RS08210 ymfI 1615594..1616325 (+) 732 WP_065214371.1 elongation factor P 5-aminopentanone reductase -
  N8A73_RS08215 - 1616399..1616656 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  N8A73_RS08220 - 1616788..1617579 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  N8A73_RS08225 - 1617603..1618502 (+) 900 WP_034281897.1 helix-turn-helix domain-containing protein -
  N8A73_RS08230 pgsA 1618576..1619157 (+) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  N8A73_RS08235 cinA 1619174..1620424 (+) 1251 WP_034281899.1 competence/damage-inducible protein A Machinery gene
  N8A73_RS08240 recA 1620602..1621645 (+) 1044 WP_034281901.1 recombinase RecA Machinery gene
  N8A73_RS08245 rny 1621954..1623516 (+) 1563 WP_003211958.1 ribonuclease Y -
  N8A73_RS08250 - 1623607..1624401 (+) 795 WP_264316094.1 TIGR00282 family metallophosphoesterase -
  N8A73_RS08255 spoVS 1624604..1624864 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45565.63 Da        Isoelectric Point: 4.7414

>NTDB_id=748740 N8A73_RS08235 WP_034281899.1 1619174..1620424(+) (cinA) [Bacillus safensis strain LG01]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASSLGKELVLNEEAFESIQDYFLKTGRVMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLRES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=748740 N8A73_RS08235 WP_034281899.1 1619174..1620424(+) (cinA) [Bacillus safensis strain LG01]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACCATTGCGAGCTCGCTTGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCTAAAGACCGGACGCGTTATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGGTCTGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCGGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAGATCGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGACGCTCAAACGAATCCGACAATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTGGCGCGGGTAGGTGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
ATCCAAAGCCTTGCACGAGCACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAGCAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGAGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGGCCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCTACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGT
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAGAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus pneumoniae TIGR4

48.219

100

0.488
  cinA Streptococcus mitis SK321

48.219

100

0.488
  cinA Streptococcus mitis NCTC 12261

47.981

100

0.486
  cinA Streptococcus pneumoniae Rx1

47.981

100

0.486
  cinA Streptococcus pneumoniae R6

47.981

100

0.486
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus pneumoniae D39

47.743

100

0.483
  cinA Streptococcus suis isolate S10

43.386

90.865

0.394