Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HZ311_RS06680 Genome accession   NZ_AP019810
Coordinates   1402881..1404125 (-) Length   414 a.a.
NCBI ID   WP_023520517.1    Uniprot ID   A0AAI8R964
Organism   Enterococcus mundtii strain 15-1A     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1397881..1409125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZ311_RS06665 (EM151A_1374) - 1398682..1399650 (-) 969 WP_137072960.1 hypothetical protein -
  HZ311_RS06670 (EM151A_1375) rny 1399890..1401446 (-) 1557 WP_010734077.1 ribonuclease Y -
  HZ311_RS06675 (EM151A_1376) recA 1401735..1402775 (-) 1041 WP_178946547.1 recombinase RecA Machinery gene
  HZ311_RS06680 (EM151A_1377) cinA 1402881..1404125 (-) 1245 WP_023520517.1 competence/damage-inducible protein A Machinery gene
  HZ311_RS06685 (EM151A_1379) pgsA 1404352..1404930 (-) 579 WP_178946548.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HZ311_RS06690 (EM151A_1380) - 1405102..1405992 (-) 891 WP_010734073.1 helix-turn-helix domain-containing protein -
  HZ311_RS06695 (EM151A_1381) yfmH 1406288..1407577 (-) 1290 WP_023520520.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HZ311_RS06700 (EM151A_1382) yfmF 1407570..1408838 (-) 1269 WP_010734071.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45306.79 Da        Isoelectric Point: 5.1991

>NTDB_id=74243 HZ311_RS06680 WP_023520517.1 1402881..1404125(-) (cinA) [Enterococcus mundtii strain 15-1A]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYHTVVGDNPTRLEELLQLAESRSELIILCGGLGPTEDDLTKEV
VAKHLDRKLIQNTEGYKKLLAFFETTKRKMTDNNLQQSQIIEGGTPLPNRTGLALGTFYQTKSNAYLLLPGPPSELKPMF
VEQVRPLLEQQFPSEEKLISKVLRFYGIGESQLVTDLKDLIATQINPTIAPYAKPNEVTLRLTVKTSDIHAGNQALHALE
EKIQARVGEYFYGYGDDYSLPQAVVDLLKEQGKTVTAVESLTAGGFQSALGAIPGVSQVFSGGFVTYSAETKAKLLGIDP
DLLEQFGTVSKECAEQMAIRARQLVGTDYAVAFTGVAGPDTLEGHPAGTVWLAVASKEGVETKECHFTRDRSAIRNSAIM
QGFDLLRKQLLRKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=74243 HZ311_RS06680 WP_023520517.1 1402881..1404125(-) (cinA) [Enterococcus mundtii strain 15-1A]
ATGAAATCTGAAATCATAGCAGTAGGAACAGAATTATTACTTGGACAAGTCGTGAATACGAATGCGACATTTTTATCAGA
ACAGTTAGCAGATCTAGGAATCGATGTCTATTATCACACAGTTGTCGGGGATAATCCGACTCGTTTGGAGGAGTTACTCC
AGTTAGCTGAATCAAGAAGTGAACTAATCATTTTATGTGGTGGATTAGGACCAACAGAAGATGATTTAACAAAAGAAGTT
GTTGCAAAACACCTTGATAGAAAACTGATCCAAAATACAGAAGGTTACAAGAAACTGTTGGCATTTTTCGAAACGACAAA
AAGAAAAATGACGGATAACAATTTACAACAGTCCCAAATCATTGAAGGTGGCACACCATTACCTAATCGAACTGGCTTAG
CGTTAGGCACGTTTTATCAAACGAAAAGCAATGCCTATCTTTTACTTCCTGGGCCACCGAGTGAGTTGAAGCCGATGTTT
GTAGAACAAGTACGCCCCTTGTTAGAACAACAATTCCCTTCAGAAGAAAAACTGATCTCAAAAGTGTTGCGCTTCTATGG
CATTGGTGAATCACAATTAGTAACCGATCTAAAAGACTTGATTGCTACACAAATCAATCCCACGATTGCTCCTTATGCCA
AACCAAATGAAGTCACACTGAGATTGACCGTCAAAACGTCAGACATCCATGCAGGGAATCAAGCGTTGCACGCACTAGAA
GAAAAAATCCAAGCCCGTGTCGGTGAATATTTTTATGGCTATGGGGATGACTATTCGTTGCCACAAGCCGTCGTGGATCT
ACTGAAAGAACAGGGGAAGACAGTCACAGCAGTTGAGAGTTTGACAGCCGGAGGCTTTCAATCCGCACTAGGAGCGATTC
CTGGCGTCTCTCAAGTCTTTTCTGGTGGTTTTGTGACTTATTCAGCAGAGACCAAAGCAAAGCTCTTAGGCATCGATCCA
GACCTGTTAGAGCAGTTTGGCACAGTCAGTAAAGAATGCGCCGAACAAATGGCGATTCGAGCACGCCAACTCGTTGGTAC
AGATTATGCCGTAGCGTTTACTGGCGTAGCGGGACCCGACACATTAGAAGGACATCCTGCGGGTACAGTTTGGCTTGCCG
TTGCATCAAAAGAAGGCGTAGAAACAAAAGAATGTCACTTCACAAGAGACCGTTCGGCAATCAGAAATAGCGCGATTATG
CAAGGATTTGATCTGCTAAGAAAGCAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.589

100

0.541
  cinA Streptococcus pneumoniae TIGR4

51.905

100

0.527
  cinA Streptococcus pneumoniae Rx1

51.667

100

0.524
  cinA Streptococcus mitis SK321

51.667

100

0.524
  cinA Streptococcus pneumoniae R6

51.667

100

0.524
  cinA Streptococcus pneumoniae D39

51.667

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.519
  cinA Bacillus subtilis subsp. subtilis str. 168

48.786

99.517

0.486
  cinA Streptococcus suis isolate S10

43.237

100

0.432

Multiple sequence alignment