Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VroAM7_RS16340 Genome accession   NZ_AP019798
Coordinates   3449186..3450295 (-) Length   369 a.a.
NCBI ID   WP_038882827.1    Uniprot ID   -
Organism   Vibrio rotiferianus strain AM7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3444186..3455295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VroAM7_RS16310 (VroAM7_29910) hemF 3444714..3445631 (-) 918 WP_010444666.1 oxygen-dependent coproporphyrinogen oxidase -
  VroAM7_RS16315 (VroAM7_29920) - 3445666..3446223 (-) 558 WP_143693114.1 L-threonylcarbamoyladenylate synthase -
  VroAM7_RS16320 (VroAM7_29930) purE 3446424..3446909 (+) 486 WP_005429815.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VroAM7_RS16325 (VroAM7_29940) - 3446914..3448047 (+) 1134 WP_143693116.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VroAM7_RS16330 (VroAM7_29950) - 3448112..3448681 (-) 570 WP_143693118.1 type I DNA topoisomerase -
  VroAM7_RS16335 (VroAM7_29960) - 3448704..3449183 (-) 480 WP_005429833.1 DUF494 family protein -
  VroAM7_RS16340 (VroAM7_29970) dprA 3449186..3450295 (-) 1110 WP_038882827.1 DNA-processing protein DprA Machinery gene
  VroAM7_RS16345 (VroAM7_29980) - 3450279..3451373 (-) 1095 WP_138941396.1 LysM peptidoglycan-binding domain-containing protein -
  VroAM7_RS16350 (VroAM7_29990) def 3451512..3452030 (+) 519 WP_038882825.1 peptide deformylase -
  VroAM7_RS16355 (VroAM7_30000) fmt 3452064..3453011 (+) 948 WP_038882824.1 methionyl-tRNA formyltransferase -
  VroAM7_RS16360 (VroAM7_30010) rsmB 3453093..3454376 (+) 1284 WP_143693120.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39444.12 Da        Isoelectric Point: 5.9868

>NTDB_id=74147 VroAM7_RS16340 WP_038882827.1 3449186..3450295(-) (dprA) [Vibrio rotiferianus strain AM7]
MKPHNDTDLAAWLKLSCLPGIGGVKMNKLLSKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLAWVAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGEASCLSQPQIAMVGSRNASVDGLQHARTFASDLVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPVRHRGLAQRVTENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIQNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=74147 VroAM7_RS16340 WP_038882827.1 3449186..3450295(-) (dprA) [Vibrio rotiferianus strain AM7]
ATGAAACCACACAATGATACTGATCTCGCTGCCTGGTTAAAGCTTAGCTGTTTACCGGGCATTGGTGGGGTCAAGATGAA
TAAGTTGCTCAGTAAAGATACGCCGAGCAATATTGTCCAATACTCGACAGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAATTGCAAGCGTGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGGCTTGGGTTGCTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTCCTTAAACAAACGGTCGCACCGCCTCCTTTACTCTTTGTAAAAGG
AGAGGCGAGCTGTTTGTCTCAACCTCAAATAGCCATGGTTGGCAGCCGTAATGCCAGTGTGGATGGGCTACAACATGCAA
GAACTTTTGCATCTGATTTGGTGCAACACGATCTGATCGTCACCAGTGGCTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGTGCGCTGTTGGCTGGAGGTAAAACCATCGCAGTGCTCGGCTCGGGATTAGAACAAGTATACCCAGTAAGACACCG
AGGTTTGGCGCAGCGAGTGACCGAAAATGGAGCGCTTGTTTCAGAGTTTCGTCCAGATGCTAAACCTCGCGCAGAAAACT
TTCCACGGCGCAATCGAATCATCAGTGGCTTGTCGCTGGGTGTGTTAGTGGTAGAAGCGGCTGAAAAAAGTGGCTCCTTG
ATTACGGCGCGTTATGCTTTAGAACAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCACCCAACGCCAGTGG
CGGTAATCAATTGATTCAGAACGGGGCTTGTCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTGCTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

97.832

100

0.978
  dprA Vibrio cholerae strain A1552

58.378

100

0.585
  dprA Glaesserella parasuis strain SC1401

47.467

100

0.482
  dprA Legionella pneumophila strain ERS1305867

47.112

89.16

0.42
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis strain C311

37.34

100

0.396
  dprA Neisseria meningitidis MC58

37.34

100

0.396
  dprA Neisseria gonorrhoeae MS11

36.434

100

0.382
  dprA Neisseria gonorrhoeae strain FA1090

36.176

100

0.379
  dprA Acinetobacter baylyi ADP1

40.476

91.057

0.369

Multiple sequence alignment