Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilA1 | Type | Machinery gene |
| Locus tag | K5607_RS18225 | Genome accession | NZ_AP019782 |
| Coordinates | 3863418..3863822 (+) | Length | 134 a.a. |
| NCBI ID | WP_054772645.1 | Uniprot ID | - |
| Organism | Methylogaea oryzae strain E10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3858418..3868822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5607_RS17230 (MoryE10_33660) | - | 3858556..3858834 (+) | 279 | WP_156302254.1 | hypothetical protein | - |
| K5607_RS17235 (MoryE10_33670) | - | 3858831..3859808 (-) | 978 | WP_156302253.1 | CHAD domain-containing protein | - |
| K5607_RS17240 (MoryE10_33680) | - | 3859839..3860411 (-) | 573 | WP_054772638.1 | RNA polymerase sigma factor | - |
| K5607_RS17245 (MoryE10_33690) | - | 3860574..3861683 (+) | 1110 | WP_054772637.1 | cytochrome c peroxidase | - |
| K5607_RS17250 (MoryE10_33700) | - | 3861696..3862769 (+) | 1074 | WP_221047748.1 | metallophosphoesterase | - |
| K5607_RS17255 (MoryE10_33710) | - | 3862787..3863191 (+) | 405 | WP_054772646.1 | hypothetical protein | - |
| K5607_RS18225 (MoryE10_33720) | pilA/pilA1 | 3863418..3863822 (+) | 405 | WP_054772645.1 | pilin | Machinery gene |
| K5607_RS17265 (MoryE10_33730) | pyrE | 3863927..3864574 (-) | 648 | WP_054772636.1 | orotate phosphoribosyltransferase | - |
| K5607_RS17270 (MoryE10_33740) | hemW | 3864847..3865998 (-) | 1152 | WP_246598914.1 | radical SAM family heme chaperone HemW | - |
| K5607_RS17275 (MoryE10_33750) | - | 3866356..3866538 (+) | 183 | WP_221047749.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 134 a.a. Molecular weight: 13359.40 Da Isoelectric Point: 4.8014
>NTDB_id=73996 K5607_RS18225 WP_054772645.1 3863418..3863822(+) (pilA/pilA1) [Methylogaea oryzae strain E10]
MQKAQQGFTLIELMIVVAIIGILAAIAIPAYSDYTAKAQASEGFSLLDGLKTPLSENVDANGTCAAPTGAVVTGKYGAIV
ITGDTTACVATFTYAAPASAKIIGATSALTYTPAAANPWSCASSLPAGIKPASC
MQKAQQGFTLIELMIVVAIIGILAAIAIPAYSDYTAKAQASEGFSLLDGLKTPLSENVDANGTCAAPTGAVVTGKYGAIV
ITGDTTACVATFTYAAPASAKIIGATSALTYTPAAANPWSCASSLPAGIKPASC
Nucleotide
Download Length: 405 bp
>NTDB_id=73996 K5607_RS18225 WP_054772645.1 3863418..3863822(+) (pilA/pilA1) [Methylogaea oryzae strain E10]
ATGCAAAAAGCACAACAGGGCTTCACCTTGATCGAACTGATGATCGTTGTGGCCATTATCGGTATCTTGGCAGCCATCGC
GATCCCGGCTTACAGCGATTACACTGCAAAGGCGCAAGCATCGGAAGGTTTTTCTCTGCTGGACGGCCTGAAAACGCCTC
TGTCTGAAAACGTCGATGCAAACGGCACCTGTGCCGCCCCGACTGGTGCAGTAGTAACCGGTAAATACGGCGCGATCGTT
ATCACGGGCGACACCACCGCATGTGTCGCGACTTTCACCTATGCCGCCCCGGCCAGCGCAAAAATTATCGGCGCCACCTC
GGCATTGACGTATACCCCCGCAGCGGCCAATCCTTGGTCTTGCGCAAGCAGCTTGCCGGCCGGCATCAAACCGGCTTCGT
GCTAA
ATGCAAAAAGCACAACAGGGCTTCACCTTGATCGAACTGATGATCGTTGTGGCCATTATCGGTATCTTGGCAGCCATCGC
GATCCCGGCTTACAGCGATTACACTGCAAAGGCGCAAGCATCGGAAGGTTTTTCTCTGCTGGACGGCCTGAAAACGCCTC
TGTCTGAAAACGTCGATGCAAACGGCACCTGTGCCGCCCCGACTGGTGCAGTAGTAACCGGTAAATACGGCGCGATCGTT
ATCACGGGCGACACCACCGCATGTGTCGCGACTTTCACCTATGCCGCCCCGGCCAGCGCAAAAATTATCGGCGCCACCTC
GGCATTGACGTATACCCCCGCAGCGGCCAATCCTTGGTCTTGCGCAAGCAGCTTGCCGGCCGGCATCAAACCGGCTTCGT
GCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilA1 | Eikenella corrodens VA1 |
43.59 |
100 |
0.507 |
| pilA2 | Legionella pneumophila str. Paris |
46.043 |
100 |
0.478 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
45.714 |
100 |
0.478 |
| pilA | Acinetobacter nosocomialis M2 |
51.24 |
90.299 |
0.463 |
| comP | Acinetobacter baylyi ADP1 |
42.466 |
100 |
0.463 |
| pilA | Pseudomonas aeruginosa PAK |
38.255 |
100 |
0.425 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.857 |
99.254 |
0.425 |
| pilA | Acinetobacter baumannii strain A118 |
38.889 |
100 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.732 |
100 |
0.41 |