Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | K5607_RS14305 | Genome accession | NZ_AP019782 |
| Coordinates | 3240405..3241619 (+) | Length | 404 a.a. |
| NCBI ID | WP_221047411.1 | Uniprot ID | A0A8D4VRY0 |
| Organism | Methylogaea oryzae strain E10 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3235405..3246619
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5607_RS14295 (MoryE10_27930) | - | 3235842..3238664 (+) | 2823 | WP_221047410.1 | valine--tRNA ligase | - |
| K5607_RS14300 (MoryE10_27940) | - | 3238761..3240224 (+) | 1464 | WP_054772613.1 | HDOD domain-containing protein | - |
| K5607_RS14305 (MoryE10_27950) | pilC | 3240405..3241619 (+) | 1215 | WP_221047411.1 | type II secretion system F family protein | Machinery gene |
| K5607_RS14310 (MoryE10_27960) | pilD | 3241639..3242502 (+) | 864 | WP_054772612.1 | A24 family peptidase | Machinery gene |
| K5607_RS14315 (MoryE10_27970) | coaE | 3242534..3243154 (+) | 621 | WP_054772611.1 | dephospho-CoA kinase | - |
| K5607_RS14320 (MoryE10_27980) | zapD | 3243297..3244064 (+) | 768 | WP_054772610.1 | cell division protein ZapD | - |
| K5607_RS14325 (MoryE10_27990) | mtnC | 3244095..3244778 (-) | 684 | WP_054772609.1 | acireductone synthase | - |
| K5607_RS14330 (MoryE10_28000) | - | 3244775..3245338 (-) | 564 | WP_054772608.1 | cupin | - |
| K5607_RS14335 (MoryE10_28010) | - | 3245335..3245952 (-) | 618 | WP_246598871.1 | methylthioribulose 1-phosphate dehydratase | - |
Sequence
Protein
Download Length: 404 a.a. Molecular weight: 43845.63 Da Isoelectric Point: 9.3771
>NTDB_id=73988 K5607_RS14305 WP_221047411.1 3240405..3241619(+) (pilC) [Methylogaea oryzae strain E10]
MAAEEQIYFNYVATDKTGKKITGELAGKNELAVRAELRRQGLKPTKVKLKPKPLFGKAKANITAKDIALFSRQLATMMTA
GVPLVTAFEIVGRGHENPAMQDLILGIKSDVESGNTLAETLRKYPLQFNELYCNLVAAGEQAGILEGLLHKIATYLEKTE
SLKAKIKKALFYPVAVLVVAGIVTAILLIFVVPTFEELFKGFGAELPAFTQFVVGLSHGLVNTWYYILGVIGGMIYGFKS
LKQNSKEFNNRLDRLMLRLGPIGSILNKAAVARFARTLSTMSAAGVPLVEALKSVAGASGNIVYYDAIMKMRDDVSNGQQ
LQLSMRQSGIFPNMVIQMIAIGEESGSLDSMLGKVADFYEEEVDNAVDALTSLLEPMIMAFLGVVIGGLIVAMYLPIFKM
GAVT
MAAEEQIYFNYVATDKTGKKITGELAGKNELAVRAELRRQGLKPTKVKLKPKPLFGKAKANITAKDIALFSRQLATMMTA
GVPLVTAFEIVGRGHENPAMQDLILGIKSDVESGNTLAETLRKYPLQFNELYCNLVAAGEQAGILEGLLHKIATYLEKTE
SLKAKIKKALFYPVAVLVVAGIVTAILLIFVVPTFEELFKGFGAELPAFTQFVVGLSHGLVNTWYYILGVIGGMIYGFKS
LKQNSKEFNNRLDRLMLRLGPIGSILNKAAVARFARTLSTMSAAGVPLVEALKSVAGASGNIVYYDAIMKMRDDVSNGQQ
LQLSMRQSGIFPNMVIQMIAIGEESGSLDSMLGKVADFYEEEVDNAVDALTSLLEPMIMAFLGVVIGGLIVAMYLPIFKM
GAVT
Nucleotide
Download Length: 1215 bp
>NTDB_id=73988 K5607_RS14305 WP_221047411.1 3240405..3241619(+) (pilC) [Methylogaea oryzae strain E10]
ATGGCAGCTGAAGAACAAATCTATTTCAATTACGTCGCCACCGACAAGACCGGCAAGAAAATTACGGGCGAACTGGCCGG
CAAAAATGAATTAGCCGTTCGCGCGGAATTACGGCGTCAGGGTCTCAAGCCAACGAAAGTCAAACTAAAACCGAAGCCCC
TGTTCGGCAAAGCCAAAGCCAATATCACAGCCAAGGACATCGCCCTGTTCAGCCGGCAGTTGGCGACCATGATGACGGCC
GGCGTGCCGCTGGTCACCGCCTTCGAAATCGTTGGACGCGGCCATGAAAACCCCGCCATGCAGGATTTGATCCTGGGCAT
CAAATCCGACGTGGAAAGCGGCAATACCTTGGCCGAAACCCTGCGCAAATACCCTCTCCAGTTCAACGAACTGTACTGCA
ACCTGGTCGCGGCCGGCGAGCAAGCGGGTATTTTGGAAGGCTTGCTGCACAAAATCGCCACTTACCTGGAAAAAACCGAA
TCGCTCAAGGCGAAAATCAAGAAAGCCTTGTTCTACCCCGTCGCCGTGCTGGTGGTGGCGGGCATCGTCACCGCCATTTT
GCTGATTTTCGTCGTACCCACGTTTGAAGAGCTGTTCAAGGGATTCGGCGCAGAACTACCGGCATTCACACAATTCGTCG
TTGGCCTATCCCATGGCTTAGTGAACACCTGGTACTACATACTCGGCGTCATCGGCGGCATGATTTACGGCTTCAAAAGC
CTGAAGCAAAACTCCAAAGAATTTAACAACCGGCTGGATCGATTGATGTTGCGCCTCGGTCCCATCGGCTCGATCCTCAA
CAAAGCGGCAGTGGCCCGTTTCGCCCGCACCCTGTCGACCATGTCCGCTGCCGGCGTTCCGCTGGTGGAAGCGCTCAAAT
CGGTAGCCGGCGCGTCGGGCAACATCGTGTATTACGACGCCATCATGAAAATGCGCGACGACGTCTCCAACGGACAGCAG
CTGCAATTGTCCATGCGCCAGTCCGGCATTTTTCCCAATATGGTGATACAGATGATCGCCATCGGCGAAGAATCGGGCTC
CCTCGACAGCATGCTGGGCAAGGTGGCGGACTTTTACGAAGAGGAGGTCGACAACGCCGTGGACGCCCTCACCAGTTTGC
TCGAACCCATGATCATGGCGTTTTTGGGCGTAGTCATCGGCGGCTTGATCGTCGCCATGTACCTGCCGATTTTCAAAATG
GGCGCCGTCACCTAA
ATGGCAGCTGAAGAACAAATCTATTTCAATTACGTCGCCACCGACAAGACCGGCAAGAAAATTACGGGCGAACTGGCCGG
CAAAAATGAATTAGCCGTTCGCGCGGAATTACGGCGTCAGGGTCTCAAGCCAACGAAAGTCAAACTAAAACCGAAGCCCC
TGTTCGGCAAAGCCAAAGCCAATATCACAGCCAAGGACATCGCCCTGTTCAGCCGGCAGTTGGCGACCATGATGACGGCC
GGCGTGCCGCTGGTCACCGCCTTCGAAATCGTTGGACGCGGCCATGAAAACCCCGCCATGCAGGATTTGATCCTGGGCAT
CAAATCCGACGTGGAAAGCGGCAATACCTTGGCCGAAACCCTGCGCAAATACCCTCTCCAGTTCAACGAACTGTACTGCA
ACCTGGTCGCGGCCGGCGAGCAAGCGGGTATTTTGGAAGGCTTGCTGCACAAAATCGCCACTTACCTGGAAAAAACCGAA
TCGCTCAAGGCGAAAATCAAGAAAGCCTTGTTCTACCCCGTCGCCGTGCTGGTGGTGGCGGGCATCGTCACCGCCATTTT
GCTGATTTTCGTCGTACCCACGTTTGAAGAGCTGTTCAAGGGATTCGGCGCAGAACTACCGGCATTCACACAATTCGTCG
TTGGCCTATCCCATGGCTTAGTGAACACCTGGTACTACATACTCGGCGTCATCGGCGGCATGATTTACGGCTTCAAAAGC
CTGAAGCAAAACTCCAAAGAATTTAACAACCGGCTGGATCGATTGATGTTGCGCCTCGGTCCCATCGGCTCGATCCTCAA
CAAAGCGGCAGTGGCCCGTTTCGCCCGCACCCTGTCGACCATGTCCGCTGCCGGCGTTCCGCTGGTGGAAGCGCTCAAAT
CGGTAGCCGGCGCGTCGGGCAACATCGTGTATTACGACGCCATCATGAAAATGCGCGACGACGTCTCCAACGGACAGCAG
CTGCAATTGTCCATGCGCCAGTCCGGCATTTTTCCCAATATGGTGATACAGATGATCGCCATCGGCGAAGAATCGGGCTC
CCTCGACAGCATGCTGGGCAAGGTGGCGGACTTTTACGAAGAGGAGGTCGACAACGCCGTGGACGCCCTCACCAGTTTGC
TCGAACCCATGATCATGGCGTTTTTGGGCGTAGTCATCGGCGGCTTGATCGTCGCCATGTACCTGCCGATTTTCAAAATG
GGCGCCGTCACCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
58.481 |
97.772 |
0.572 |
| pilC | Legionella pneumophila strain ERS1305867 |
58.376 |
97.525 |
0.569 |
| pilC | Acinetobacter baylyi ADP1 |
54.798 |
98.02 |
0.537 |
| pilC | Acinetobacter baumannii D1279779 |
54.798 |
98.02 |
0.537 |
| pilG | Neisseria gonorrhoeae MS11 |
45.592 |
98.267 |
0.448 |
| pilG | Neisseria meningitidis 44/76-A |
45.592 |
98.267 |
0.448 |
| pilC | Vibrio cholerae strain A1552 |
43.038 |
97.772 |
0.421 |
| pilC | Vibrio campbellii strain DS40M4 |
41.919 |
98.02 |
0.411 |
| pilC | Thermus thermophilus HB27 |
38 |
99.01 |
0.376 |