Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   K5607_RS14310 Genome accession   NZ_AP019782
Coordinates   3241639..3242502 (+) Length   287 a.a.
NCBI ID   WP_054772612.1    Uniprot ID   -
Organism   Methylogaea oryzae strain E10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3236639..3247502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5607_RS14300 (MoryE10_27940) - 3238761..3240224 (+) 1464 WP_054772613.1 HDOD domain-containing protein -
  K5607_RS14305 (MoryE10_27950) pilC 3240405..3241619 (+) 1215 WP_221047411.1 type II secretion system F family protein Machinery gene
  K5607_RS14310 (MoryE10_27960) pilD 3241639..3242502 (+) 864 WP_054772612.1 A24 family peptidase Machinery gene
  K5607_RS14315 (MoryE10_27970) coaE 3242534..3243154 (+) 621 WP_054772611.1 dephospho-CoA kinase -
  K5607_RS14320 (MoryE10_27980) zapD 3243297..3244064 (+) 768 WP_054772610.1 cell division protein ZapD -
  K5607_RS14325 (MoryE10_27990) mtnC 3244095..3244778 (-) 684 WP_054772609.1 acireductone synthase -
  K5607_RS14330 (MoryE10_28000) - 3244775..3245338 (-) 564 WP_054772608.1 cupin -
  K5607_RS14335 (MoryE10_28010) - 3245335..3245952 (-) 618 WP_246598871.1 methylthioribulose 1-phosphate dehydratase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31182.03 Da        Isoelectric Point: 8.2365

>NTDB_id=73989 K5607_RS14310 WP_054772612.1 3241639..3242502(+) (pilD) [Methylogaea oryzae strain E10]
MELITLLKQQPLLFVALTAVAGLAVGSFLNVVIHRLPRMMETRWKRECREYLGLPQENDGPQANYNLLTPGSHCPNCGAA
VRAIHNIPLLSYLALRGRCSSCGAAIAWRYPLIELLTAVLSAAVAWRYGYGEQALCALLFTWALLSLALIDLEHQLLPDA
IVLPLLWLGLLLSLGNVFVDSHAAIAAAAAGYLSLWGVYHLFRLATGKEGMGYGDFKLLAALGAWTGWTMLPLIILLSSL
VGAVAGIALILLRGRDRNVPMPFGPFLAAAGWIALLWGQSILDIYLR

Nucleotide


Download         Length: 864 bp        

>NTDB_id=73989 K5607_RS14310 WP_054772612.1 3241639..3242502(+) (pilD) [Methylogaea oryzae strain E10]
ATGGAACTGATCACCCTGTTAAAACAACAGCCCTTGTTGTTCGTCGCATTGACGGCCGTGGCGGGTTTGGCCGTGGGCAG
CTTTCTCAATGTCGTGATTCACCGCCTGCCGCGCATGATGGAAACCCGCTGGAAACGGGAATGCCGCGAATATCTGGGCC
TACCGCAGGAAAACGACGGTCCGCAGGCGAACTACAATTTGCTGACCCCAGGCTCTCACTGCCCAAACTGCGGCGCCGCG
GTGCGAGCGATACACAATATTCCTTTGCTTAGTTATTTGGCGCTACGCGGCCGTTGCTCTAGTTGCGGAGCCGCCATCGC
CTGGCGTTACCCGCTGATCGAGCTGCTTACCGCCGTCTTGTCGGCGGCGGTGGCTTGGCGCTACGGCTATGGCGAACAAG
CCCTGTGCGCGTTGCTGTTCACCTGGGCCTTGCTGAGCCTTGCGCTAATCGACCTGGAACACCAACTGTTGCCGGACGCC
ATTGTGCTGCCGTTGTTATGGCTGGGACTGCTATTGAGCTTGGGAAACGTTTTCGTCGACAGTCACGCAGCCATCGCCGC
CGCAGCCGCAGGCTACCTGAGTTTGTGGGGCGTCTACCACCTGTTTCGCTTGGCCACCGGCAAAGAGGGGATGGGCTACG
GCGATTTCAAGCTGTTGGCGGCATTGGGCGCCTGGACGGGCTGGACCATGCTGCCGCTGATAATTTTGCTGTCGTCCCTC
GTGGGGGCCGTCGCCGGCATCGCGCTGATCCTGCTGCGGGGGCGCGACCGCAACGTGCCCATGCCGTTCGGCCCGTTCCT
GGCGGCCGCCGGCTGGATCGCCTTGCTCTGGGGACAATCCATACTCGATATCTACCTGCGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

52.857

97.561

0.516
  pilD Acinetobacter nosocomialis M2

51.095

95.47

0.488
  pilD Vibrio campbellii strain DS40M4

48.772

99.303

0.484
  pilD Acinetobacter baumannii D1279779

50.365

95.47

0.481
  pilD Neisseria gonorrhoeae MS11

49.813

93.031

0.463

Multiple sequence alignment