NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	QBL25_RS15965	Genome accession	NZ_CP122310
Coordinates	3631500..3632105 (-)	Length	201 a.a.
NCBI ID	WP_190080566.1	Uniprot ID	A0ABW7QJT6
Organism	Streptomyces sp. SYP-A7185
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3626500..3637105

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBL25_RS15945	-	3627142..3628077 (+)	936	WP_409057697.1	hypothetical protein	-
QBL25_RS15950	-	3628185..3629192 (+)	1008	WP_409057698.1	hypothetical protein	-
QBL25_RS15955	clpX	3629314..3630600 (-)	1287	WP_409057699.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
QBL25_RS15960	clpP	3630757..3631437 (-)	681	WP_409057700.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QBL25_RS15965	clpP	3631500..3632105 (-)	606	WP_190080566.1	ATP-dependent Clp protease proteolytic subunit	Regulator
QBL25_RS15970	tig	3632408..3633805 (-)	1398	WP_409057701.1	trigger factor	-
QBL25_RS15985	-	3634399..3634593 (-)	195	WP_160505028.1	hypothetical protein	-
QBL25_RS15990	-	3635223..3636485 (+)	1263	WP_409057702.1	acyltransferase family protein	-
QBL25_RS15995	-	3636502..3636963 (-)	462	WP_409057703.1	HD domain-containing protein	-

Sequence

Protein

Download Length: 201 a.a. Molecular weight: 21253.18 Da Isoelectric Point: 4.4580

                                >NTDB_id=738868 QBL25_RS15965 WP_190080566.1 3631500..3632105(-) (clpP) [Streptomyces sp. SYP-A7185]

MPSAAGDPSIGGGLGDQVYNRLLGERIIFLGQAVDDDIANKITAQLLLLAAEPDKDIFLYINSPGGSITAGMAIYDTMQY

IQNDVVTIAMGMAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLLTKKKMAELTAFHTGQTVE

QVTRDSDRDRWFDPQEAKEYGLIDDIMPNAASMPGGGGTGA

Nucleotide

Download Length: 606 bp

                                >NTDB_id=738868 QBL25_RS15965 WP_190080566.1 3631500..3632105(-) (clpP) [Streptomyces sp. SYP-A7185]

ATGCCCTCCGCCGCCGGCGACCCCTCCATCGGTGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGAT

CATCTTCCTCGGCCAGGCCGTGGACGACGACATCGCCAACAAGATCACGGCGCAGCTGCTGCTCCTTGCCGCTGAGCCGG

ACAAGGACATTTTCCTTTACATCAACAGCCCTGGTGGATCCATCACGGCCGGCATGGCGATCTACGACACCATGCAGTAC

ATCCAGAACGACGTGGTGACGATCGCGATGGGCATGGCGGCCTCGATGGGCCAGTTCCTGCTCAGCGCCGGCACCCCCGG

CAAGCGCTTCGCGCTGCCGAACGCCGAGATCCTGATCCACCAGCCTTCCGCCGGTCTCGCGGGCTCCGCGTCGGACATCA

AGATCCACGCCGAGCGTCTCCTTCTCACGAAGAAGAAGATGGCCGAGCTCACCGCGTTCCACACGGGCCAGACCGTCGAG

CAGGTCACCCGCGACTCGGACCGCGACCGCTGGTTCGACCCGCAGGAGGCCAAGGAGTACGGCCTCATCGACGACATCAT

GCCCAACGCGGCCAGCATGCCGGGCGGCGGCGGCACCGGAGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(16-188)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	59.538	86.07	0.512
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	54.023	86.567	0.468
clpP	Lactococcus lactis subsp. cremoris KW2	53.143	87.065	0.463
clpP	Streptococcus mutans UA159	53.143	87.065	0.463
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	52.571	87.065	0.458
clpP	Streptococcus thermophilus LMG 18311	52	87.065	0.453
clpP	Streptococcus thermophilus LMD-9	52	87.065	0.453
clpP	Streptococcus pneumoniae Rx1	51.429	87.065	0.448
clpP	Streptococcus pneumoniae D39	51.429	87.065	0.448
clpP	Streptococcus pneumoniae R6	51.429	87.065	0.448
clpP	Streptococcus pneumoniae TIGR4	51.429	87.065	0.448
clpP	Streptococcus pyogenes JRS4	50.286	87.065	0.438
clpP	Streptococcus pyogenes MGAS315	50.286	87.065	0.438

Detailed information NTG0738868