Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   QBL25_RS15960 Genome accession   NZ_CP122310
Coordinates   3630757..3631437 (-) Length   226 a.a.
NCBI ID   WP_409057700.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7185     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3625757..3636437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBL25_RS15945 - 3627142..3628077 (+) 936 WP_409057697.1 hypothetical protein -
  QBL25_RS15950 - 3628185..3629192 (+) 1008 WP_409057698.1 hypothetical protein -
  QBL25_RS15955 clpX 3629314..3630600 (-) 1287 WP_409057699.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  QBL25_RS15960 clpP 3630757..3631437 (-) 681 WP_409057700.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QBL25_RS15965 clpP 3631500..3632105 (-) 606 WP_190080566.1 ATP-dependent Clp protease proteolytic subunit Regulator
  QBL25_RS15970 tig 3632408..3633805 (-) 1398 WP_409057701.1 trigger factor -
  QBL25_RS15985 - 3634399..3634593 (-) 195 WP_160505028.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24929.28 Da        Isoelectric Point: 4.6288

>NTDB_id=738867 QBL25_RS15960 WP_409057700.1 3630757..3631437(-) (clpP) [Streptomyces sp. SYP-A7185]
MKNFPGSGRYEPAQAEYTGPSAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISIYINSPGGSFTALTAIYDTMQFVKPDVQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDMLAKHSTTPIEKIRDDIERDKILTAEDALSYGLVDQIISTRKMNNSSVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=738867 QBL25_RS15960 WP_409057700.1 3630757..3631437(-) (clpP) [Streptomyces sp. SYP-A7185]
ATGAAGAACTTCCCCGGCAGCGGCCGCTACGAGCCCGCCCAGGCCGAGTACACCGGCCCGAGCGCCGAATCCCGCTACGT
GATCCCGCGCTTCGTCGAGCGCACTTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCGTCGGCCAACGACGTCATGGCGCAGCTCCTGTGTCTGGAGTCGATGGACCCC
GACCGTGACATCTCGATCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTT
CGTGAAGCCCGACGTGCAGACGGTCTGCATGGGCCAGGCCGCGTCCGCCGCCGCCGTGCTCCTCGCGGCCGGTACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGCGTCCTGATCCACCAGCCCTACAGCGAGACGGGCCGCGGTCAGGTCTCCGAC
CTGGAGATCGCCGCCAACGAGATCCTCCGGATGCGTTCGCAGCTGGAGGACATGCTGGCCAAGCACTCCACGACGCCGAT
CGAGAAGATCCGCGACGACATCGAGCGCGACAAGATCCTCACGGCCGAGGACGCGCTGTCGTACGGCCTGGTCGACCAGA
TCATCTCCACCCGGAAGATGAACAACTCGTCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus mutans UA159

44.724

88.053

0.394
  clpP Lactococcus lactis subsp. cremoris KW2

44.724

88.053

0.394
  clpP Streptococcus thermophilus LMD-9

45.641

86.283

0.394
  clpP Streptococcus thermophilus LMG 18311

45.641

86.283

0.394
  clpP Streptococcus pneumoniae R6

44.898

86.726

0.389
  clpP Streptococcus pneumoniae Rx1

44.898

86.726

0.389
  clpP Streptococcus pneumoniae TIGR4

44.898

86.726

0.389
  clpP Streptococcus pneumoniae D39

44.898

86.726

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

43.719

88.053

0.385