Detailed information
Bioinformatically predicted
Overview
| Name | pilJ | Type | Machinery gene |
| Locus tag | NDN57_RS02340 | Genome accession | NZ_CP107264 |
| Coordinates | 452798..453748 (+) | Length | 316 a.a. |
| NCBI ID | WP_229930486.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10231 | ||
| Function | type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 440010..506400 | 452798..453748 | within | 0 |
Gene organization within MGE regions
Location: 440010..506400
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NDN57_RS02275 (NDN57_002275) | - | 440010..440993 (+) | 984 | WP_003687900.1 | ribose-phosphate pyrophosphokinase | - |
| NDN57_RS02280 (NDN57_002280) | - | 441060..441632 (+) | 573 | WP_003687901.1 | 50S ribosomal protein L25/general stress protein Ctc | - |
| NDN57_RS02285 (NDN57_002285) | - | 441758..442927 (-) | 1170 | WP_003687902.1 | D-alanyl-D-alanine carboxypeptidase family protein | - |
| NDN57_RS02290 (NDN57_002290) | ilvA | 443076..444602 (+) | 1527 | WP_003687904.1 | threonine ammonia-lyase, biosynthetic | - |
| NDN57_RS02295 (NDN57_002295) | - | 444658..445734 (-) | 1077 | WP_003692814.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| NDN57_RS02300 (NDN57_002300) | cysW | 445731..446591 (-) | 861 | WP_003699617.1 | sulfate ABC transporter permease subunit CysW | - |
| NDN57_RS02305 (NDN57_002305) | cysT | 446780..447607 (-) | 828 | WP_003699619.1 | sulfate ABC transporter permease subunit CysT | - |
| NDN57_RS02310 (NDN57_002310) | - | 447788..448120 (+) | 333 | WP_003687908.1 | hypothetical protein | - |
| NDN57_RS02315 (NDN57_002315) | - | 448447..448956 (+) | 510 | WP_003687909.1 | isoprenylcysteine carboxyl methyltransferase family protein | - |
| NDN57_RS02320 (NDN57_002320) | - | 449188..449769 (-) | 582 | WP_229930487.1 | superoxide dismutase | - |
| NDN57_RS02325 (NDN57_002325) | dnaB | 449933..451339 (+) | 1407 | WP_003699622.1 | replicative DNA helicase | - |
| NDN57_RS02330 (NDN57_002330) | pilH | 451493..452158 (+) | 666 | WP_003699624.1 | Tfp pilus assembly protein FimT/FimU | Machinery gene |
| NDN57_RS02335 (NDN57_002335) | pilV | 452190..452801 (+) | 612 | WP_003699626.1 | type IV pilus modification protein PilV | Machinery gene |
| NDN57_RS02340 (NDN57_002340) | pilJ | 452798..453748 (+) | 951 | WP_229930486.1 | PilW family protein | Machinery gene |
| NDN57_RS02345 (NDN57_002345) | pilK | 453727..454338 (+) | 612 | WP_033911077.1 | PilX N-terminal domain-containing pilus assembly protein | Machinery gene |
| NDN57_RS02350 (NDN57_002350) | pilL | 454340..454825 (+) | 486 | WP_229930488.1 | PilX family type IV pilin | Machinery gene |
| NDN57_RS02355 (NDN57_002355) | - | 454895..455203 (-) | 309 | WP_025456177.1 | AzlD family protein | - |
| NDN57_RS02360 (NDN57_002360) | - | 455200..455910 (-) | 711 | Protein_463 | AzlC family ABC transporter permease | - |
| NDN57_RS02365 (NDN57_002365) | dut | 456076..456528 (+) | 453 | WP_229930485.1 | dUTP diphosphatase | - |
| NDN57_RS02370 (NDN57_002370) | dapC | 456604..457791 (+) | 1188 | WP_003699639.1 | succinyldiaminopimelate transaminase | - |
| NDN57_RS02375 (NDN57_002375) | yaaA | 457947..458726 (+) | 780 | WP_003699641.1 | peroxide stress protein YaaA | - |
| NDN57_RS02390 (NDN57_002390) | - | 459256..460449 (+) | 1194 | WP_017146746.1 | phage integrase central domain-containing protein | - |
| NDN57_RS02395 (NDN57_002395) | - | 460805..461074 (-) | 270 | WP_003687928.1 | hypothetical protein | - |
| NDN57_RS02400 (NDN57_002400) | - | 461269..461952 (-) | 684 | WP_003687929.1 | DUF2786 domain-containing protein | - |
| NDN57_RS11715 | - | 462233..462499 (-) | 267 | Protein_470 | hypothetical protein | - |
| NDN57_RS02410 (NDN57_002410) | - | 462610..462825 (-) | 216 | WP_003691538.1 | hypothetical protein | - |
| NDN57_RS02415 (NDN57_002415) | - | 462877..463368 (-) | 492 | WP_033911206.1 | siphovirus Gp157 family protein | - |
| NDN57_RS02420 (NDN57_002420) | - | 463365..463547 (-) | 183 | WP_003691535.1 | hypothetical protein | - |
| NDN57_RS02425 (NDN57_002425) | - | 463687..464373 (-) | 687 | WP_010357532.1 | phage replication initiation protein, NGO0469 family | - |
| NDN57_RS02430 (NDN57_002430) | - | 464442..464603 (-) | 162 | WP_003693867.1 | hypothetical protein | - |
| NDN57_RS02435 (NDN57_002435) | - | 464600..464878 (-) | 279 | WP_229930511.1 | NGO1622 family putative holin | - |
| NDN57_RS02440 (NDN57_002440) | - | 465031..465363 (-) | 333 | WP_033910331.1 | phage associated protein | - |
| NDN57_RS02445 (NDN57_002445) | - | 465505..465756 (-) | 252 | WP_229930508.1 | hypothetical protein | - |
| NDN57_RS02450 (NDN57_002450) | - | 465753..466229 (-) | 477 | WP_002255718.1 | DUF6948 domain-containing protein | - |
| NDN57_RS02455 (NDN57_002455) | - | 466262..466462 (-) | 201 | WP_003692842.1 | hypothetical protein | - |
| NDN57_RS02460 (NDN57_002460) | - | 466946..467164 (+) | 219 | WP_003691731.1 | hypothetical protein | - |
| NDN57_RS02465 (NDN57_002465) | - | 467181..467540 (-) | 360 | WP_003691733.1 | hypothetical protein | - |
| NDN57_RS02470 (NDN57_002470) | - | 467541..468080 (-) | 540 | WP_003695998.1 | Panacea domain-containing protein | - |
| NDN57_RS02475 (NDN57_002475) | - | 468240..468956 (-) | 717 | WP_003695999.1 | helix-turn-helix transcriptional regulator | - |
| NDN57_RS02480 (NDN57_002480) | - | 469337..469564 (+) | 228 | WP_003698261.1 | helix-turn-helix domain-containing protein | - |
| NDN57_RS02485 (NDN57_002485) | - | 469682..470746 (+) | 1065 | WP_003689134.1 | hypothetical protein | - |
| NDN57_RS02490 (NDN57_002490) | - | 470743..472104 (+) | 1362 | WP_003689132.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| NDN57_RS02495 (NDN57_002495) | - | 472121..472351 (+) | 231 | WP_012503490.1 | hypothetical protein | - |
| NDN57_RS02500 (NDN57_002500) | - | 472443..472937 (+) | 495 | WP_003691434.1 | DUF3310 domain-containing protein | - |
| NDN57_RS02505 (NDN57_002505) | - | 473114..473263 (+) | 150 | WP_003689110.1 | hypothetical protein | - |
| NDN57_RS02510 (NDN57_002510) | - | 473291..473572 (+) | 282 | WP_003689109.1 | hypothetical protein | - |
| NDN57_RS02515 (NDN57_002515) | - | 473563..473943 (+) | 381 | WP_033911195.1 | RusA family crossover junction endodeoxyribonuclease | - |
| NDN57_RS02520 (NDN57_002520) | - | 473960..474088 (-) | 129 | WP_012503747.1 | hypothetical protein | - |
| NDN57_RS02525 (NDN57_002525) | - | 474210..474617 (+) | 408 | WP_003691430.1 | hypothetical protein | - |
| NDN57_RS02530 (NDN57_002530) | - | 474708..475868 (+) | 1161 | WP_003691428.1 | type I restriction endonuclease | - |
| NDN57_RS02535 (NDN57_002535) | - | 476150..477019 (+) | 870 | WP_003700071.1 | BRO family protein | - |
| NDN57_RS02540 (NDN57_002540) | - | 477312..477761 (+) | 450 | WP_003689093.1 | hypothetical protein | - |
| NDN57_RS02545 (NDN57_002545) | terL | 477823..479244 (+) | 1422 | WP_003697216.1 | phage terminase large subunit | - |
| NDN57_RS02550 (NDN57_002550) | - | 479241..481388 (+) | 2148 | WP_003691423.1 | phage portal protein | - |
| NDN57_RS02555 (NDN57_002555) | - | 481456..482613 (+) | 1158 | WP_003698618.1 | hypothetical protein | - |
| NDN57_RS02560 (NDN57_002560) | - | 482654..484153 (+) | 1500 | WP_003691419.1 | hypothetical protein | - |
| NDN57_RS02565 (NDN57_002565) | - | 484160..484522 (+) | 363 | WP_003689082.1 | hypothetical protein | - |
| NDN57_RS02570 (NDN57_002570) | - | 484525..485055 (+) | 531 | WP_003689080.1 | head-tail connector protein | - |
| NDN57_RS02575 (NDN57_002575) | - | 485055..485537 (+) | 483 | WP_003706029.1 | HK97 gp10 family phage protein | - |
| NDN57_RS02580 (NDN57_002580) | - | 485534..485962 (+) | 429 | WP_003697213.1 | hypothetical protein | - |
| NDN57_RS02585 (NDN57_002585) | - | 485988..486761 (+) | 774 | WP_003691416.1 | hypothetical protein | - |
| NDN57_RS02590 (NDN57_002590) | - | 486823..487152 (+) | 330 | WP_003689072.1 | hypothetical protein | - |
| NDN57_RS02595 (NDN57_002595) | - | 487164..487430 (+) | 267 | WP_003692873.1 | hypothetical protein | - |
| NDN57_RS02600 (NDN57_002600) | - | 487430..488029 (+) | 600 | WP_003692874.1 | DUF2460 domain-containing protein | - |
| NDN57_RS02605 (NDN57_002605) | - | 488026..488880 (+) | 855 | WP_003698614.1 | DUF2163 domain-containing protein | - |
| NDN57_RS02610 (NDN57_002610) | - | 488882..489313 (+) | 432 | WP_003689064.1 | NlpC/P60 family protein | - |
| NDN57_RS02615 (NDN57_002615) | - | 489341..489619 (-) | 279 | WP_003692877.1 | helix-turn-helix domain-containing protein | - |
| NDN57_RS02620 (NDN57_002620) | - | 489859..494004 (+) | 4146 | WP_229930498.1 | phage tail protein | - |
| NDN57_RS02625 (NDN57_002625) | - | 494116..494421 (+) | 306 | WP_047917725.1 | hypothetical protein | - |
| NDN57_RS02630 (NDN57_002630) | - | 494492..494962 (+) | 471 | WP_003691410.1 | hypothetical protein | - |
| NDN57_RS02635 (NDN57_002635) | - | 494963..495295 (+) | 333 | WP_003691408.1 | hypothetical protein | - |
| NDN57_RS02640 (NDN57_002640) | - | 495649..495996 (-) | 348 | WP_003689051.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| NDN57_RS02645 (NDN57_002645) | - | 495996..496232 (-) | 237 | WP_003689049.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | - |
| NDN57_RS02650 (NDN57_002650) | - | 496439..496978 (+) | 540 | WP_202838336.1 | TIGR02594 family protein | - |
| NDN57_RS02655 (NDN57_002655) | - | 496978..497136 (+) | 159 | WP_003691816.1 | hypothetical protein | - |
| NDN57_RS02660 (NDN57_002660) | - | 497120..497461 (+) | 342 | WP_003700102.1 | hypothetical protein | - |
| NDN57_RS02665 (NDN57_002665) | - | 497445..497618 (+) | 174 | WP_017146757.1 | hypothetical protein | - |
| NDN57_RS02670 (NDN57_002670) | - | 497930..498079 (+) | 150 | WP_003691402.1 | hypothetical protein | - |
| NDN57_RS02675 (NDN57_002675) | - | 498109..501156 (+) | 3048 | WP_229930507.1 | tape measure protein | - |
| NDN57_RS02680 (NDN57_002680) | - | 501216..501695 (-) | 480 | WP_002241413.1 | DUF4760 domain-containing protein | - |
| NDN57_RS02685 (NDN57_002685) | - | 502037..503026 (-) | 990 | WP_003689040.1 | site-specific integrase | - |
| NDN57_RS02690 (NDN57_002690) | - | 503286..503474 (-) | 189 | WP_003689039.1 | hypothetical protein | - |
| NDN57_RS02695 (NDN57_002695) | purM | 503715..504749 (+) | 1035 | WP_003692893.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| NDN57_RS02700 (NDN57_002700) | - | 505747..506400 (+) | 654 | WP_229930236.1 | IS1595 family transposase | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 34787.51 Da Isoelectric Point: 9.3584
>NTDB_id=738867 NDN57_RS02340 WP_229930486.1 452798..453748(+) (pilJ) [Neisseria gonorrhoeae strain 10231]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGNAKIAASSDNIIYAYRINATIRGGNVCANRTL
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAEQQDLRNAATLIVRDARMAGSFG
CFNMSEHTGNDVVSNVAQKNALFYLKRNSTNSTNSTNKLIPITESPNINYQKFFQVSSALIFQYGIDDVNASAATTVVSS
CAAISKPGKQIPTLEDAKKELKIVSQDKEQNGNIARQRHVVNAYAVGRIADEQGLFRFQLNEKGEWGNPQLLAKKIKRMR
VRYIYVSDCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGGNAKIAASSDNIIYAYRINATIRGGNVCANRTL
Nucleotide
Download Length: 951 bp
>NTDB_id=738867 NDN57_RS02340 WP_229930486.1 452798..453748(+) (pilJ) [Neisseria gonorrhoeae strain 10231]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTAATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCGAGCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGGAAATGATGTTGTTTCCAATGTGGCGCAAAAAAACGCTCTTTTTTACTTAAAAAG
GAACAGTACAAACAGTACAAACAGTACAAATAAACTTATCCCCATAACGGAATCTCCAAATATCAATTATCAGAAATTTT
TCCAGGTTAGTAGCGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGCGACTACCGTCGTCAGCAGC
TGTGCCGCAATATCGAAACCGGGCAAGCAAATCCCTACTTTAGAAGATGCAAAAAAAGAATTGAAGATTGTGAGTCAGGA
TAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGATTGCCGATGAGCAAG
GTTTGTTCCGCTTCCAATTGAATGAAAAGGGTGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAACGTATGAGA
GTGCGGTATATCTATGTTTCCGATTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATACGGATAAATT
CGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTGGTAATGCCAAGATTGCCGCTTCTTCAGATA
ATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACGCTTTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilJ | Neisseria gonorrhoeae MS11 |
92.722 |
100 |
0.927 |