Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N7L95_RS10270 Genome accession   NZ_CP106951
Coordinates   2351307..2352527 (+) Length   406 a.a.
NCBI ID   WP_301259724.1    Uniprot ID   -
Organism   Eleftheria terrae strain P9846-PB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2346307..2357527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7L95_RS10245 (N7L95_10260) rpmA 2347319..2347576 (-) 258 WP_301259721.1 50S ribosomal protein L27 -
  N7L95_RS10250 (N7L95_10265) rplU 2347611..2347922 (-) 312 WP_301259722.1 50S ribosomal protein L21 -
  N7L95_RS10255 (N7L95_10270) ispB 2348238..2349167 (+) 930 WP_301260118.1 octaprenyl diphosphate synthase -
  N7L95_RS10265 (N7L95_10280) pilB 2349545..2351263 (+) 1719 WP_301259723.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N7L95_RS10270 (N7L95_10285) pilC 2351307..2352527 (+) 1221 WP_301259724.1 type II secretion system F family protein Machinery gene
  N7L95_RS10275 (N7L95_10290) - 2352543..2353397 (+) 855 WP_301259725.1 A24 family peptidase -
  N7L95_RS10280 (N7L95_10295) coaE 2353434..2354039 (+) 606 WP_301259726.1 dephospho-CoA kinase -
  N7L95_RS10285 (N7L95_10300) zapD 2354188..2354943 (+) 756 WP_301259727.1 cell division protein ZapD -
  N7L95_RS10290 (N7L95_10305) yacG 2354943..2355164 (+) 222 WP_301259728.1 DNA gyrase inhibitor YacG -
  N7L95_RS10295 (N7L95_10310) - 2355198..2355641 (-) 444 WP_301259730.1 NUDIX domain-containing protein -
  N7L95_RS10300 (N7L95_10315) - 2355638..2356543 (-) 906 WP_301259731.1 ATP-binding protein -
  N7L95_RS10305 (N7L95_10320) pdeM 2356607..2357269 (-) 663 WP_301259732.1 ligase-associated DNA damage response endonuclease PdeM -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44396.31 Da        Isoelectric Point: 9.7773

>NTDB_id=736791 N7L95_RS10270 WP_301259724.1 2351307..2352527(+) (pilC) [Eleftheria terrae strain P9846-PB]
MATAAAAKKVQEFVFEWEGKDRNGKPVRGEMRAGGEAMVSASLRRQGVLITKVKKRRMGGGKAIQQKDIAIFTRQLATMM
RAGVPLLQSFDIVGRGSANPKLTRLLNDIRTDIETGTSLSSAFRKHPLYFDALYCNLVEAGEAAGILETLLERLAVYQEK
TLAIKAKIKSALIYPVSVMVVAFIVVAVIMIFVIPAFKDVFKSFGADLPAPTLFVIAMSEFFVAYWWLIFGTLIGGTYFF
FESWKRSEKMQRTMDRLLLRVPVFGSLVYKSAVARWTRTLATMFAAGVPLVEALDSVGGASGNAVFTEATEKIQKDVSTG
SSLTMSMQSTGIFPIMVLQMCSIGEESGSIDHMLNKAAEFYEAEVDEAVKGLSSLMEPIIIVVLGSLIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=736791 N7L95_RS10270 WP_301259724.1 2351307..2352527(+) (pilC) [Eleftheria terrae strain P9846-PB]
ATGGCAACGGCTGCTGCGGCAAAAAAGGTTCAGGAATTCGTATTCGAGTGGGAAGGCAAGGACCGCAATGGCAAGCCTGT
GCGCGGCGAAATGCGCGCGGGCGGCGAAGCGATGGTCAGTGCCAGCCTGCGTCGCCAGGGCGTGCTGATCACCAAGGTGA
AGAAGCGCCGCATGGGCGGTGGCAAGGCCATCCAGCAGAAGGACATCGCCATCTTCACCCGCCAGCTGGCGACCATGATG
CGCGCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCCGGGGCAGCGCCAATCCGAAGCTGACGCGTCTGCTGAA
CGACATCCGCACGGACATCGAGACCGGCACGAGCCTGTCTTCGGCCTTCCGCAAGCATCCGCTGTACTTCGATGCGCTGT
ATTGCAACCTGGTGGAAGCCGGTGAGGCCGCGGGTATTCTCGAGACCCTGCTGGAACGTCTCGCCGTTTACCAGGAAAAG
ACGCTGGCCATCAAGGCCAAGATCAAGTCGGCCCTGATCTACCCGGTGTCGGTGATGGTGGTGGCCTTCATCGTGGTGGC
CGTGATCATGATTTTCGTGATCCCTGCCTTCAAGGACGTGTTCAAGTCTTTCGGTGCCGACCTGCCGGCACCGACGCTGT
TTGTCATCGCGATGTCGGAGTTTTTCGTCGCCTACTGGTGGCTGATCTTCGGCACGCTGATCGGCGGCACCTATTTCTTC
TTCGAGTCCTGGAAACGCTCGGAGAAGATGCAACGGACGATGGACCGCCTGCTGCTGCGGGTGCCGGTCTTCGGCTCGCT
GGTCTACAAGTCGGCCGTCGCCCGCTGGACCCGCACACTGGCCACGATGTTCGCCGCCGGCGTGCCGCTGGTGGAAGCGC
TGGACTCGGTCGGCGGCGCCTCCGGCAATGCCGTCTTCACCGAAGCCACCGAGAAGATCCAGAAGGACGTGTCCACCGGT
TCCAGCCTGACCATGTCCATGCAGTCCACCGGCATCTTCCCGATCATGGTGCTGCAGATGTGCTCCATCGGTGAGGAATC
GGGCTCGATCGACCACATGCTGAACAAGGCCGCCGAGTTCTACGAGGCGGAGGTCGACGAAGCGGTCAAGGGTCTGTCCA
GCCTGATGGAGCCCATCATCATCGTCGTGCTCGGCAGCCTGATCGGCGGCATCGTCGTGTCGATGTACCTGCCCATCTTC
AAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.455

99.507

0.542
  pilG Neisseria meningitidis 44/76-A

53

98.522

0.522
  pilG Neisseria gonorrhoeae MS11

53

98.522

0.522
  pilC Legionella pneumophila strain ERS1305867

51.01

97.537

0.498
  pilC Acinetobacter baylyi ADP1

49.268

100

0.498
  pilC Acinetobacter baumannii D1279779

47.666

100

0.478
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Thermus thermophilus HB27

38.995

100

0.401
  pilC Vibrio campbellii strain DS40M4

39.651

98.768

0.392