Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   LLE35_RS12055 Genome accession   NZ_CP106773
Coordinates   2087356..2087652 (-) Length   98 a.a.
NCBI ID   WP_405083701.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10562     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2082356..2092652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE35_RS11045 (LLE35_10965) msrAB 2082551..2084119 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  LLE35_RS11050 (LLE35_10970) pilA 2084265..2085518 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  LLE35_RS11055 (LLE35_10975) - 2085964..2086669 (-) 706 Protein_2135 opacity family porin -
  LLE35_RS12050 pilE 2087147..2087359 (-) 213 WP_405083700.1 pilin Machinery gene
  LLE35_RS12055 pilE 2087356..2087652 (-) 297 WP_405083701.1 pilin Machinery gene
  LLE35_RS11065 (LLE35_10985) - 2088024..2088167 (-) 144 WP_012503975.1 hypothetical protein -
  LLE35_RS11070 (LLE35_10990) - 2088272..2088352 (-) 81 Protein_2139 pilin -
  LLE35_RS11075 (LLE35_10995) - 2088470..2088874 (-) 405 Protein_2140 pilin -
  LLE35_RS11080 (LLE35_11000) - 2089401..2089814 (-) 414 Protein_2141 pilin -
  LLE35_RS11085 (LLE35_11005) lpxC 2089914..2090837 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  LLE35_RS11920 - 2091329..2092051 (-) 723 WP_374110874.1 pilin -
  LLE35_RS11105 (LLE35_11025) - 2092077..2092292 (-) 216 Protein_2144 pilin -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10543.33 Da        Isoelectric Point: 10.1921

>NTDB_id=734862 LLE35_RS12055 WP_405083701.1 2087356..2087652(-) (pilE) [Neisseria gonorrhoeae strain 10562]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNHGKWPENNTSAGVASPPTKS
KANMLKRLKLKTASSPPK

Nucleotide


Download         Length: 297 bp        

>NTDB_id=734862 LLE35_RS12055 WP_405083701.1 2087356..2087652(-) (pilE) [Neisseria gonorrhoeae strain 10562]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATCACGGCAAATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCCCGACAAAATCA
AAGGCAAATATGTTAAAGAGGTTGAAGTTAAAAACGGCGTCGTCACCGCCAAAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)

Pilin (bacterial filament) (Pilin)

(36-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

87.097

94.898

0.827
  pilE Neisseria gonorrhoeae strain FA1090

93.59

79.592

0.745
  pilA Ralstonia pseudosolanacearum GMI1000

54.878

83.673

0.459
  pilA/pilA1 Eikenella corrodens VA1

53.012

84.694

0.449
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

66.129

63.265

0.418
  pilA2 Legionella pneumophila str. Paris

56.944

73.469

0.418
  pilA2 Legionella pneumophila strain ERS1305867

56.944

73.469

0.418
  comP Acinetobacter baylyi ADP1

67.241

59.184

0.398
  pilA/pilAI Pseudomonas stutzeri DSM 10701

60.317

64.286

0.388