Detailed information    

insolico Bioinformatically predicted

Overview

Name   tpc   Type   Machinery gene
Locus tag   LLE28_RS01360 Genome accession   NZ_CP106771
Coordinates   268781..269821 (-) Length   346 a.a.
NCBI ID   WP_003690743.1    Uniprot ID   A0AAQ1IL04
Organism   Neisseria gonorrhoeae strain 10531     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 263781..274821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLE28_RS01340 - 265277..265903 (-) 627 WP_003687611.1 phosphoribosylanthranilate isomerase -
  LLE28_RS01345 greB 265962..266453 (-) 492 WP_003687613.1 transcription elongation factor GreB -
  LLE28_RS01350 purF 266553..268097 (-) 1545 WP_229930543.1 amidophosphoribosyltransferase -
  LLE28_RS01355 - 268291..268788 (-) 498 WP_003687616.1 CvpA family protein -
  LLE28_RS01360 tpc 268781..269821 (-) 1041 WP_003690743.1 cell division protein FtsN Machinery gene
  LLE28_RS01365 folC 269835..271109 (-) 1275 WP_003687619.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  LLE28_RS01370 - 271140..271580 (-) 441 WP_003687622.1 protein YgfX -
  LLE28_RS01375 - 271585..271944 (-) 360 WP_003687624.1 hypothetical protein -
  LLE28_RS01380 - 272017..272745 (-) 729 WP_010357138.1 amino acid ABC transporter ATP-binding protein -
  LLE28_RS01385 - 272787..273242 (-) 456 WP_003690747.1 hypothetical protein -
  LLE28_RS01390 - 273353..273922 (-) 570 WP_003687630.1 GTP pyrophosphokinase -
  LLE28_RS01395 rsmA 273937..274716 (-) 780 WP_003690749.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37006.18 Da        Isoelectric Point: 9.8118

>NTDB_id=734767 LLE28_RS01360 WP_003690743.1 268781..269821(-) (tpc) [Neisseria gonorrhoeae strain 10531]
MSENKQNEVLTGYEQLKRRNRRRLVTASSLVAASCILLAAALSSDPADSNPAPQAGETGATESQTANTAQTPALKSAAEN
GETAADKPQDLAGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEESEKLQQAETAKTEPKQAKQRAAEKVSATA
DSTDTVAVEKPKRTAEPKPQKAERTAEAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAEGKKTAEK
DRSDGKKHETAQKTDKADKTKTAEKEKSGKAGKKAAIQAGYAEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSN
YKNARDAERDLNKLRVHGIAGQVTNE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=734767 LLE28_RS01360 WP_003690743.1 268781..269821(-) (tpc) [Neisseria gonorrhoeae strain 10531]
ATGTCCGAAAACAAACAAAACGAAGTCCTGACCGGTTACGAACAGCTGAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGCTCCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCACTCAGTTCCGATCCTGCCGACAGCAATCCCGCACCGC
AGGCCGGCGAAACCGGCGCAACGGAAAGCCAAACGGCAAACACGGCACAAACCCCTGCCTTGAAATCCGCCGCCGAAAAC
GGGGAAACCGCCGCCGACAAACCGCAGGACTTGGCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCC
TGAAAACGTAGGCGCGCCGCTGGTGCTGATTAACGACCGGCTCGAAGACAGCAACATCAAAGGTTTGGAAGAATCCGAGA
AACTGCAACAGGCAGAAACCGCCAAAACCGAACCGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGTCGGCAACTGCC
GACAGTACGGATACGGTAGCGGTTGAAAAACCGAAACGCACTGCCGAACCCAAACCGCAAAAAGCGGAACGCACTGCCGA
AGCCAAGCCCAAAGCCAAAGAAACCAAAACCGCCGAAAAAGTTGCCGACAAACCGAAAACTGCTGCCGAAAAAACCAAAC
CGGATACGGCAAAATCCGACAGCGCGGTAAAAGAAGCGAAAAAAGCCGACAAGGCTGAAGGCAAAAAGACAGCCGAAAAA
GACCGTTCGGACGGCAAAAAACACGAAACGGCGCAAAAAACCGACAAAGCGGACAAAACCAAAACCGCCGAGAAGGAAAA
ATCCGGCAAGGCGGGCAAAAAAGCCGCCATTCAGGCAGGTTATGCCGAAAAAGAACGCGCCTTGAGCCTCCAGCGCAAAA
TGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATCATGACCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAAC
TATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAACTGCGCGTGCACGGCATCGCCGGCCAGGTAACGAATGAATA
G

Domains

Predicted by InterproScan.

SPOR domain (SPOR)

(272-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

99.711

100

0.997