Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N8I74_RS06110 Genome accession   NZ_CP106753
Coordinates   1355972..1357204 (-) Length   410 a.a.
NCBI ID   WP_408611867.1    Uniprot ID   -
Organism   Chitiniphilus purpureus strain CD1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350972..1362204
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8I74_RS06080 (N8I74_06080) - 1351673..1352266 (-) 594 WP_263125962.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  N8I74_RS06085 (N8I74_06085) - 1352544..1353293 (-) 750 WP_263125963.1 GNAT family N-acetyltransferase -
  N8I74_RS06090 (N8I74_06090) - 1353477..1353662 (-) 186 WP_263125964.1 DNA gyrase inhibitor YacG -
  N8I74_RS06095 (N8I74_06095) zapD 1353659..1354531 (-) 873 WP_263125966.1 cell division protein ZapD -
  N8I74_RS06100 (N8I74_06100) coaE 1354489..1355100 (-) 612 WP_263125967.1 dephospho-CoA kinase -
  N8I74_RS06105 (N8I74_06105) pilD 1355106..1355972 (-) 867 WP_263125968.1 A24 family peptidase Machinery gene
  N8I74_RS06110 (N8I74_06110) pilC 1355972..1357204 (-) 1233 WP_408611867.1 type II secretion system F family protein Machinery gene
  N8I74_RS06115 (N8I74_06115) pilB 1357220..1358929 (-) 1710 WP_263125970.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N8I74_RS06120 (N8I74_06120) - 1359158..1359967 (-) 810 WP_263125971.1 inner membrane protein YpjD -
  N8I74_RS06125 (N8I74_06125) ffh 1360049..1361398 (+) 1350 WP_263125972.1 signal recognition particle protein -
  N8I74_RS06130 (N8I74_06130) rpsP 1361503..1361751 (+) 249 WP_263125973.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44994.12 Da        Isoelectric Point: 9.9793

>NTDB_id=734467 N8I74_RS06110 WP_408611867.1 1355972..1357204(-) (pilC) [Chitiniphilus purpureus strain CD1]
MAVATAKMAGAKQKETTFIWEGKDRSGKVIKGEMRASGEAVLRNHLRRQGINVTKIKKQRLRTGRRITEQDVTMFTRQLA
TMLKSGVPLLTAFDIVAKGHSNASMTKLLMEIKSDIETGSSMTQAFRKHPLYFDALYCNLLQAGEQAGILDTLLARLATY
KEKILSVKKKIKSAMFYPTAVIVAAFVITAVIMIFVIPAFKDLFSSFGADLPAPTLLVIALSDMFVDYWWLIFGGIFGGI
WLFMNALKRSEALQIAWDRFLLKLPILGQIVKNATIARWARTLSTMFAAGVPLVDSLESVGGASGNYIYRIATKKIQTEV
ATGTSLTLAMQNANVFPNMVLQMTSIGEESGSLDSMLSKVADYYEEEVDNAVDALSSLMEPIIMVVLGVLIGGLVIAMYL
PIFKMGEAVG

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=734467 N8I74_RS06110 WP_408611867.1 1355972..1357204(-) (pilC) [Chitiniphilus purpureus strain CD1]
ATGGCAGTCGCAACGGCAAAGATGGCAGGTGCCAAGCAAAAGGAAACCACCTTCATCTGGGAAGGCAAGGACCGCTCAGG
CAAGGTGATCAAAGGCGAAATGCGCGCCTCGGGCGAGGCGGTATTGCGGAATCATCTGCGTCGCCAGGGCATCAATGTCA
CCAAGATCAAGAAGCAAAGGCTCAGGACCGGGCGGCGCATCACCGAGCAGGACGTCACCATGTTCACCCGGCAATTGGCG
ACCATGCTCAAGTCCGGCGTGCCGTTGCTGACGGCGTTCGATATCGTCGCCAAGGGCCACAGCAATGCCTCGATGACCAA
GCTGCTGATGGAAATCAAGTCGGACATCGAAACCGGCTCGTCCATGACCCAGGCATTCCGCAAGCACCCGCTTTATTTCG
ACGCGCTGTATTGCAACCTGCTGCAGGCCGGCGAACAGGCCGGTATTCTCGATACGCTTCTGGCACGGCTGGCGACCTAC
AAGGAGAAGATCCTGTCGGTCAAGAAGAAGATCAAGTCCGCAATGTTTTACCCCACCGCAGTGATCGTGGCGGCATTCGT
GATCACCGCCGTGATCATGATCTTCGTGATTCCGGCGTTCAAGGATCTGTTCTCGAGCTTCGGCGCGGACCTGCCGGCGC
CCACGCTGCTGGTGATCGCGCTCTCGGATATGTTCGTCGACTACTGGTGGTTGATCTTCGGCGGCATTTTCGGGGGCATC
TGGCTGTTCATGAATGCGCTCAAACGCTCCGAGGCGCTGCAGATCGCCTGGGATCGCTTCCTGCTCAAGCTGCCCATTCT
CGGGCAGATCGTCAAAAACGCCACGATTGCCCGCTGGGCCCGCACCTTGTCGACCATGTTCGCAGCCGGGGTGCCGCTGG
TGGATTCGCTGGAGTCGGTCGGCGGCGCGTCGGGCAACTACATCTATCGGATCGCGACCAAGAAGATCCAGACCGAGGTT
GCCACCGGCACCAGCCTGACACTGGCGATGCAGAACGCCAATGTCTTCCCGAACATGGTGCTGCAGATGACCTCGATCGG
TGAGGAGTCCGGTTCGCTCGACTCGATGCTGAGCAAGGTCGCCGACTACTACGAAGAGGAAGTCGACAACGCGGTCGACG
CGTTGTCCAGCCTGATGGAGCCGATCATCATGGTCGTGCTCGGCGTGCTGATCGGCGGCCTCGTCATCGCGATGTACCTG
CCGATCTTCAAGATGGGCGAGGCGGTGGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-401)

Type II secretion system (T2SS), protein F (T2SSF)

(75-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

54.408

96.829

0.527
  pilC Acinetobacter baumannii D1279779

51.691

100

0.522
  pilC Pseudomonas stutzeri DSM 10701

51.605

98.78

0.51
  pilC Acinetobacter baylyi ADP1

50.245

99.512

0.5
  pilG Neisseria gonorrhoeae MS11

51.005

97.073

0.495
  pilG Neisseria meningitidis 44/76-A

50.754

97.073

0.493
  pilC Vibrio campbellii strain DS40M4

40.1

97.317

0.39
  pilC Vibrio cholerae strain A1552

39.348

97.317

0.383