Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   P4831_RS02175 Genome accession   NZ_CP120842
Coordinates   410581..411393 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain ZFM559     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 405581..416393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P4831_RS02150 ytpR 405807..406433 (+) 627 WP_031559372.1 YtpR family tRNA-binding protein -
  P4831_RS02155 - 406596..407936 (+) 1341 WP_023163754.1 FAD-dependent oxidoreductase -
  P4831_RS02160 - 408026..408415 (+) 390 WP_023163755.1 single-stranded DNA-binding protein -
  P4831_RS02165 groES 408535..408819 (+) 285 WP_003131589.1 co-chaperone GroES -
  P4831_RS02170 groL 408907..410535 (+) 1629 WP_003131585.1 chaperonin GroEL -
  P4831_RS02175 vicX 410581..411393 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  P4831_RS02180 vicK 411564..413006 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  P4831_RS02185 yycF 412999..413700 (-) 702 WP_003131580.1 response regulator YycF -
  P4831_RS02190 tmk 413878..414513 (+) 636 WP_012897230.1 dTMP kinase -
  P4831_RS02195 - 414646..415506 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  P4831_RS02200 yaaT 415558..416340 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=734466 P4831_RS02175 WP_003131583.1 410581..411393(-) (vicX) [Lactococcus lactis strain ZFM559]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=734466 P4831_RS02175 WP_003131583.1 410581..411393(-) (vicX) [Lactococcus lactis strain ZFM559]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685