Detailed information NTG0734466

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N8I74_RS06105
• Genome accession: NZ_CP106753
• Coordinates: 1355106..1355972 (-)
• Length: 288 a.a.
• NCBI ID: WP_263125968.1
• Uniprot ID: -
• Organism: Chitiniphilus purpureus strain CD1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1350106..1360972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N8I74_RS06075 (N8I74_06075)	-	1350858..1351679 (+)	822	WP_263125961.1	symmetrical bis(5'-nucleosyl)-tetraphosphatase	-
N8I74_RS06080 (N8I74_06080)	-	1351673..1352266 (-)	594	WP_263125962.1	1-acyl-sn-glycerol-3-phosphate acyltransferase	-
N8I74_RS06085 (N8I74_06085)	-	1352544..1353293 (-)	750	WP_263125963.1	GNAT family N-acetyltransferase	-
N8I74_RS06090 (N8I74_06090)	-	1353477..1353662 (-)	186	WP_263125964.1	DNA gyrase inhibitor YacG	-
N8I74_RS06095 (N8I74_06095)	zapD	1353659..1354531 (-)	873	WP_263125966.1	cell division protein ZapD	-
N8I74_RS06100 (N8I74_06100)	coaE	1354489..1355100 (-)	612	WP_263125967.1	dephospho-CoA kinase	-
N8I74_RS06105 (N8I74_06105)	pilD	1355106..1355972 (-)	867	WP_263125968.1	A24 family peptidase	Machinery gene
N8I74_RS06110 (N8I74_06110)	pilC	1355972..1357204 (-)	1233	WP_408611867.1	type II secretion system F family protein	Machinery gene
N8I74_RS06115 (N8I74_06115)	pilB	1357220..1358929 (-)	1710	WP_263125970.1	type IV-A pilus assembly ATPase PilB	Machinery gene
N8I74_RS06120 (N8I74_06120)	-	1359158..1359967 (-)	810	WP_263125971.1	inner membrane protein YpjD	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31213.24 Da
• Isoelectric Point: 8.6151

>NTDB_id=734466 N8I74_RS06105 WP_263125968.1 1355106..1355972(-) (pilD) [Chitiniphilus purpureus strain CD1]
MLWQALLDNPLPYSGLVFVLGLLVGSFLNVAIHRLPRMIEADLRHECQLIDLPADTPWPDRPRYNLWVPRSACPHCGHHI
GALENVPVLSYLALRGRCRGCGQRISPRYPLVEMLSAVLSAVVAWQFGPSLAGVGALLLTWALIALVFIDADTFLLPDSI
TLPLLWAGLLLNLLGGFVPLHQAVIGAMAGYLALWSVYWAFKLLTGKEGMGYGDFKLLAALGAWFGWQAIPIIVLLSSVA
GAILGGAMMLAARKGLSKPMPFGPYLGIAGWLTLVWGASLRQALFPTL

Nucleotide

• Length: 867 bp

>NTDB_id=734466 N8I74_RS06105 WP_263125968.1 1355106..1355972(-) (pilD) [Chitiniphilus purpureus strain CD1]
ATGCTCTGGCAAGCGCTGCTTGACAACCCGCTGCCCTACAGCGGGTTGGTGTTCGTGCTGGGCCTGCTGGTCGGCAGCTT
TCTGAATGTGGCGATCCATCGCCTGCCCCGGATGATCGAGGCAGACCTGCGGCATGAATGCCAGTTGATCGACCTGCCGG
CCGATACCCCATGGCCGGACAGACCGCGCTACAACCTGTGGGTGCCCCGGTCCGCCTGCCCGCATTGCGGCCATCACATC
GGCGCACTGGAGAACGTCCCGGTGCTCAGCTATCTTGCGTTGCGCGGCCGCTGCCGCGGCTGCGGACAACGGATCAGCCC
GAGATATCCGCTCGTCGAAATGCTGAGTGCCGTGCTCAGCGCCGTCGTGGCGTGGCAGTTCGGGCCATCGCTGGCAGGTG
TGGGCGCGCTGCTGCTGACCTGGGCGCTGATTGCCCTGGTCTTCATCGATGCCGACACCTTTTTGCTCCCCGACTCGATC
ACCCTGCCGCTGCTTTGGGCAGGCCTGCTGCTGAACCTGCTTGGCGGGTTCGTACCGCTGCATCAGGCCGTGATCGGTGC
CATGGCCGGCTATCTTGCGCTGTGGAGCGTGTACTGGGCCTTCAAGTTGCTGACCGGCAAGGAAGGCATGGGCTATGGCG
ACTTCAAGCTGCTGGCTGCGCTGGGCGCCTGGTTCGGCTGGCAGGCCATTCCCATCATCGTGCTGCTTTCATCGGTGGCA
GGAGCGATCCTGGGGGGCGCGATGATGCTCGCCGCACGCAAAGGGCTGTCCAAACCGATGCCGTTCGGACCCTATCTCGG
TATCGCCGGGTGGCTTACGCTGGTCTGGGGTGCCTCGCTGCGCCAAGCGCTTTTCCCCACGCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (19-127)

• Type IV leader peptidase family (Peptidase_A24) (138-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	54.945	94.792	0.521
pilD	Vibrio campbellii strain DS40M4	52.768	94.097	0.497
pilD	Neisseria gonorrhoeae MS11	50	93.056	0.465
pilD	Acinetobacter baumannii D1279779	48.496	92.361	0.448
pilD	Acinetobacter nosocomialis M2	48.12	92.361	0.444