Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OEG80_RS12365 Genome accession   NZ_CP106752
Coordinates   2916754..2917977 (+) Length   407 a.a.
NCBI ID   WP_181209343.1    Uniprot ID   -
Organism   Psychrobacter sp. SC65A.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2911754..2922977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OEG80_RS12350 (SC65A3_02490) secG 2913070..2913378 (-) 309 WP_011512446.1 preprotein translocase subunit SecG -
  OEG80_RS12355 (SC65A3_02491) tpiA 2913607..2914416 (-) 810 WP_263241070.1 triose-phosphate isomerase -
  OEG80_RS12360 (SC65A3_02492) pilB 2914814..2916526 (+) 1713 WP_263241071.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OEG80_RS12365 (SC65A3_02493) pilC 2916754..2917977 (+) 1224 WP_181209343.1 type II secretion system F family protein Machinery gene
  OEG80_RS12370 (SC65A3_02494) pilD 2918003..2918902 (+) 900 WP_263241073.1 A24 family peptidase Machinery gene
  OEG80_RS12375 (SC65A3_02495) coaE 2918986..2919678 (+) 693 WP_263241074.1 dephospho-CoA kinase -
  OEG80_RS12380 (SC65A3_02496) rlmB 2919641..2920411 (-) 771 WP_133103981.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OEG80_RS12385 (SC65A3_02497) - 2920616..2920951 (-) 336 WP_020442457.1 pyrimidine/purine nucleoside phosphorylase -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 44459.37 Da        Isoelectric Point: 9.7800

>NTDB_id=734455 OEG80_RS12365 WP_181209343.1 2916754..2917977(+) (pilC) [Psychrobacter sp. SC65A.3]
MAKAKTDMLLDFVYDGVNRRGQKVKGETTSRSLELAKATLRKQGITVKGIKKKPKPLYTFKKSIKPIDIAIFARQLATMM
KAGVPLTQSFEIVADSLDNPSMKDLVLQIKADIEAGGTFASALRRHPRYFDDLFCSLVDSGEQSGALETMLERVATYKEK
SELLKAKIKKAMKYPIAVVVVAIIVTIILLVKVVPVFADLFGSFGAELPAFTQMVVGMSEWMQAWWFILIVFIGGAIIGF
SEAKKRSKKFRDVLDRAVLKAPIFGNIAYQAVIARFARTLSTTFAAGVPLIDALDSTAGAANNVVFYNAIQQIKNDVSTG
QQLQFSIRSTNLFPSLAIQMVGIGEESGSLEEMLDKVAVYYENEVDNAVDGLTSLMEPLIMAVLGVLVGGLVIAMYLPIF
QMGSVVG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=734455 OEG80_RS12365 WP_181209343.1 2916754..2917977(+) (pilC) [Psychrobacter sp. SC65A.3]
ATGGCAAAAGCTAAGACCGACATGCTGTTAGACTTTGTATATGATGGCGTCAACCGTCGCGGGCAAAAGGTAAAAGGTGA
GACGACCAGTCGTAGCTTAGAGCTTGCCAAAGCCACGTTGCGCAAACAAGGTATTACGGTTAAAGGTATCAAGAAAAAGC
CAAAACCCTTATACACCTTTAAAAAGTCTATCAAGCCTATCGATATTGCTATTTTTGCACGTCAATTAGCAACCATGATG
AAAGCTGGGGTGCCATTGACTCAATCCTTTGAGATTGTCGCGGACTCTCTCGATAATCCAAGTATGAAAGATTTGGTGTT
ACAAATCAAAGCCGATATTGAAGCGGGTGGTACTTTTGCATCGGCATTACGTCGCCATCCCCGCTATTTTGACGATCTTT
TTTGCTCGCTTGTCGATTCTGGCGAGCAGTCAGGTGCGTTAGAAACCATGCTAGAGCGAGTTGCGACTTATAAAGAGAAA
AGCGAGCTGTTAAAAGCTAAAATTAAAAAAGCCATGAAATATCCTATCGCGGTCGTTGTAGTTGCTATTATTGTCACCAT
TATTCTGCTTGTTAAAGTCGTTCCAGTGTTTGCTGATTTATTTGGCTCTTTTGGTGCAGAATTACCTGCTTTTACCCAAA
TGGTCGTAGGTATGTCTGAGTGGATGCAAGCATGGTGGTTCATCTTAATTGTATTTATTGGTGGCGCTATTATTGGCTTT
TCAGAAGCTAAGAAGCGTTCAAAGAAATTTCGCGATGTCTTAGACCGTGCGGTATTAAAAGCGCCAATATTTGGCAATAT
CGCTTACCAAGCGGTGATTGCGCGTTTTGCTCGTACGCTGTCTACGACTTTTGCTGCCGGCGTACCGCTTATTGATGCGC
TCGATTCTACTGCTGGTGCAGCCAATAATGTAGTTTTCTATAACGCTATTCAGCAAATCAAAAATGACGTCTCTACGGGA
CAACAATTACAGTTCTCAATACGTTCAACCAATTTATTTCCAAGTCTTGCTATTCAAATGGTAGGTATCGGTGAAGAGTC
TGGTAGCTTAGAAGAGATGCTCGATAAAGTAGCAGTCTATTATGAAAACGAAGTTGATAACGCTGTTGATGGTTTGACCA
GCTTGATGGAGCCGCTTATTATGGCGGTACTTGGCGTATTAGTTGGTGGTTTGGTCATTGCCATGTACTTACCAATCTTC
CAGATGGGCTCAGTAGTAGGTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

70.098

100

0.703
  pilC Acinetobacter baylyi ADP1

69.118

100

0.693
  pilC Pseudomonas stutzeri DSM 10701

64.557

97.052

0.627
  pilC Legionella pneumophila strain ERS1305867

56.14

98.034

0.55
  pilC Vibrio cholerae strain A1552

43.627

100

0.437
  pilG Neisseria gonorrhoeae MS11

43.182

97.297

0.42
  pilG Neisseria meningitidis 44/76-A

42.929

97.297

0.418
  pilC Vibrio campbellii strain DS40M4

42.145

98.526

0.415