Detailed information NTG0734456

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OEG80_RS12370
• Genome accession: NZ_CP106752
• Coordinates: 2918003..2918902 (+)
• Length: 299 a.a.
• NCBI ID: WP_263241073.1
• Uniprot ID: A0A9E8XA71
• Organism: Psychrobacter sp. SC65A.3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2913003..2923902

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OEG80_RS12350 (SC65A3_02490)	secG	2913070..2913378 (-)	309	WP_011512446.1	preprotein translocase subunit SecG	-
OEG80_RS12355 (SC65A3_02491)	tpiA	2913607..2914416 (-)	810	WP_263241070.1	triose-phosphate isomerase	-
OEG80_RS12360 (SC65A3_02492)	pilB	2914814..2916526 (+)	1713	WP_263241071.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OEG80_RS12365 (SC65A3_02493)	pilC	2916754..2917977 (+)	1224	WP_181209343.1	type II secretion system F family protein	Machinery gene
OEG80_RS12370 (SC65A3_02494)	pilD	2918003..2918902 (+)	900	WP_263241073.1	A24 family peptidase	Machinery gene
OEG80_RS12375 (SC65A3_02495)	coaE	2918986..2919678 (+)	693	WP_263241074.1	dephospho-CoA kinase	-
OEG80_RS12380 (SC65A3_02496)	rlmB	2919641..2920411 (-)	771	WP_133103981.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OEG80_RS12385 (SC65A3_02497)	-	2920616..2920951 (-)	336	WP_020442457.1	pyrimidine/purine nucleoside phosphorylase	-
OEG80_RS12390 (SC65A3_02498)	recN	2921501..2923180 (+)	1680	WP_263241076.1	DNA repair protein RecN	-
OEG80_RS12395 (SC65A3_02499)	-	2923311..2923874 (+)	564	WP_011512437.1	YqgE/AlgH family protein	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33122.87 Da
• Isoelectric Point: 8.6950

>NTDB_id=734456 OEG80_RS12370 WP_263241073.1 2918003..2918902(+) (pilD) [Psychrobacter sp. SC65A.3]
MQFIQLLQENMTIALVVFGLLGLCVGSFLNVVIHRTPLMMVSAWRKECSQFMYEQADMPREHTMPLVNIVATDTPITLSK
PASRCPHCAHKIKWYENIPLISWIVLRGRCSECKAAIGLRYPIVELVTALLSALVIYHFGVNMVGLSALVLVWTLIALTG
IDFDTQLLPDRLTFPLAGLGLAVNSQGWFVPPTQSIWGLLLGFLSLWIVVKIFYLITKKHGMGQGDFKLLAVLGAWLGPM
MLPLIILLSSLLGSIVGLILMKKQGESKPFAFGPYIAIAGIVALLYSSDIVNWYLGMYT

Nucleotide

• Length: 900 bp

>NTDB_id=734456 OEG80_RS12370 WP_263241073.1 2918003..2918902(+) (pilD) [Psychrobacter sp. SC65A.3]
ATGCAATTTATACAGTTACTACAAGAAAATATGACCATTGCTTTGGTCGTATTTGGTCTACTAGGGCTGTGCGTCGGTAG
CTTCTTAAACGTGGTAATTCATCGCACTCCATTGATGATGGTATCGGCTTGGCGAAAAGAGTGTAGCCAGTTTATGTATG
AGCAAGCAGATATGCCGCGTGAGCATACGATGCCACTAGTTAATATTGTTGCCACTGATACACCTATTACCTTAAGTAAA
CCAGCATCGCGCTGCCCGCACTGTGCCCACAAAATTAAGTGGTATGAAAACATACCTTTAATTAGCTGGATAGTACTACG
CGGACGTTGCTCAGAGTGCAAAGCGGCTATCGGGCTTCGATATCCTATCGTTGAGCTGGTCACTGCTCTGCTATCTGCAC
TAGTCATTTATCATTTTGGCGTTAATATGGTAGGGCTGTCGGCATTAGTTTTAGTCTGGACACTCATCGCCTTAACTGGT
ATCGATTTTGATACTCAGTTATTGCCTGACCGCTTAACTTTTCCATTAGCAGGGCTAGGATTGGCGGTCAATTCACAAGG
TTGGTTTGTGCCCCCTACTCAGTCGATATGGGGCTTGTTATTGGGATTTTTATCGTTATGGATAGTGGTCAAGATATTTT
ATTTAATCACCAAAAAGCATGGCATGGGACAAGGCGACTTTAAATTATTGGCAGTACTGGGTGCGTGGCTTGGACCTATG
ATGTTACCCTTGATTATTTTATTATCATCATTGCTCGGCTCTATCGTTGGGCTTATCTTGATGAAAAAACAAGGTGAGAG
CAAGCCTTTTGCCTTTGGTCCTTATATTGCTATTGCCGGTATTGTGGCATTGTTATACAGCTCAGATATCGTTAATTGGT
ATTTAGGTATGTATACTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (149-258)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-139)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	55.017	96.656	0.532
pilD	Acinetobacter baumannii D1279779	54.325	96.656	0.525
pilD	Vibrio campbellii strain DS40M4	47.387	95.987	0.455
pilD	Vibrio cholerae strain A1552	47.857	93.645	0.448
pilD	Neisseria gonorrhoeae MS11	41.071	93.645	0.385