Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   P5661_RS08765 Genome accession   NZ_CP120600
Coordinates   1637206..1637655 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PRO112     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1632206..1642655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS08725 (P5661_08725) ctaE 1632223..1632846 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  P5661_RS08730 (P5661_08730) ctaF 1632849..1633181 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  P5661_RS08735 (P5661_08735) ctaG 1633209..1634102 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  P5661_RS08740 (P5661_08740) ylbA 1634134..1634496 (-) 363 WP_003232238.1 YugN family protein -
  P5661_RS08745 (P5661_08745) ylbB 1634636..1635082 (+) 447 WP_003221362.1 CBS domain-containing protein -
  P5661_RS08750 (P5661_08750) ylbC 1635166..1636206 (+) 1041 WP_032725641.1 CAP domain-containing protein -
  P5661_RS08755 (P5661_08755) ylbD 1636437..1636835 (+) 399 WP_277709576.1 YlbD family protein -
  P5661_RS08760 (P5661_08760) ylbE 1636851..1637090 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5661_RS08765 (P5661_08765) ylbF 1637206..1637655 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5661_RS08770 (P5661_08770) ylbG 1637710..1637982 (+) 273 WP_015715839.1 YlbG family protein -
  P5661_RS08775 (P5661_08775) rsmD 1638305..1638859 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5661_RS08780 (P5661_08780) coaD 1638864..1639349 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5661_RS08785 (P5661_08785) spoVV 1639360..1640586 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  P5661_RS08790 (P5661_08790) ylbK 1640767..1641549 (+) 783 WP_064671351.1 patatin family protein -
  P5661_RS08795 (P5661_08795) sepM 1641551..1642576 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=732967 P5661_RS08765 WP_003221370.1 1637206..1637655(+) (ylbF) [Bacillus subtilis strain PRO112]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=732967 P5661_RS08765 WP_003221370.1 1637206..1637655(+) (ylbF) [Bacillus subtilis strain PRO112]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1