Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P5661_RS08795 Genome accession   NZ_CP120600
Coordinates   1641551..1642576 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PRO112     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1636551..1647576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS08760 (P5661_08760) ylbE 1636851..1637090 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5661_RS08765 (P5661_08765) ylbF 1637206..1637655 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5661_RS08770 (P5661_08770) ylbG 1637710..1637982 (+) 273 WP_015715839.1 YlbG family protein -
  P5661_RS08775 (P5661_08775) rsmD 1638305..1638859 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5661_RS08780 (P5661_08780) coaD 1638864..1639349 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5661_RS08785 (P5661_08785) spoVV 1639360..1640586 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  P5661_RS08790 (P5661_08790) ylbK 1640767..1641549 (+) 783 WP_064671351.1 patatin family protein -
  P5661_RS08795 (P5661_08795) sepM 1641551..1642576 (+) 1026 WP_003245451.1 protease DdcP Regulator
  P5661_RS08800 (P5661_08800) ylbM 1642593..1643840 (-) 1248 WP_277709577.1 nucleotidyltransferase -
  P5661_RS08805 (P5661_08805) - 1643837..1644022 (-) 186 WP_103803451.1 hypothetical protein -
  P5661_RS08810 (P5661_08810) ylbN 1644050..1644568 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  P5661_RS08815 (P5661_08815) rpmF 1644590..1644769 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  P5661_RS08820 (P5661_08820) gerR 1644915..1645496 (+) 582 WP_103803452.1 sporulation specific transcriptional regulator GerR -
  P5661_RS08825 (P5661_08825) ylbP 1645553..1646035 (-) 483 WP_014476736.1 N-acetyltransferase -
  P5661_RS08830 (P5661_08830) - 1646195..1647091 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=732968 P5661_RS08795 WP_003245451.1 1641551..1642576(+) (sepM) [Bacillus subtilis strain PRO112]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=732968 P5661_RS08795 WP_003245451.1 1641551..1642576(+) (sepM) [Bacillus subtilis strain PRO112]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCT
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402