Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PALA7_RS24415 | Genome accession | NZ_CP104868 |
| Coordinates | 5273942..5274814 (+) | Length | 290 a.a. |
| NCBI ID | WP_003107301.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PALA7 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5268942..5279814
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PALA7_RS24390 | - | 5269153..5269467 (-) | 315 | WP_269972583.1 | pilin | - |
| PALA7_RS24395 (PALA7_04833) | - | 5269538..5270518 (-) | 981 | WP_003117291.1 | IS5-like element ISPa41 family transposase | - |
| PALA7_RS24400 (PALA7_04834) | - | 5270610..5270789 (-) | 180 | Protein_4831 | pilin | - |
| PALA7_RS24405 (PALA7_04835) | pilB | 5271020..5272720 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PALA7_RS24410 (PALA7_04836) | pilC | 5272724..5273941 (+) | 1218 | WP_003107299.1 | type II secretion system F family protein | Machinery gene |
| PALA7_RS24415 (PALA7_04837) | pilD | 5273942..5274814 (+) | 873 | WP_003107301.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| PALA7_RS24420 (PALA7_04838) | coaE | 5274811..5275422 (+) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| PALA7_RS24425 (PALA7_04839) | yacG | 5275419..5275619 (+) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| PALA7_RS24430 (PALA7_04840) | - | 5275656..5275865 (-) | 210 | WP_020750398.1 | hypothetical protein | - |
| PALA7_RS24435 (PALA7_04841) | - | 5275971..5276660 (-) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| PALA7_RS24440 (PALA7_04842) | - | 5276657..5277127 (-) | 471 | WP_003103866.1 | hypothetical protein | - |
| PALA7_RS24445 (PALA7_04843) | - | 5277124..5277549 (-) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| PALA7_RS24450 (PALA7_04844) | - | 5277682..5278311 (+) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| PALA7_RS24455 (PALA7_04845) | - | 5278308..5278757 (+) | 450 | WP_003094670.1 | MOSC domain-containing protein | - |
| PALA7_RS24460 (PALA7_04846) | - | 5278783..5278953 (+) | 171 | WP_003094672.1 | DUF3094 family protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31873.90 Da Isoelectric Point: 7.7068
>NTDB_id=732968 PALA7_RS24415 WP_003107301.1 5273942..5274814(+) (pilD) [Pseudomonas aeruginosa strain PALA7]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=732968 PALA7_RS24415 WP_003107301.1 5273942..5274814(+) (pilD) [Pseudomonas aeruginosa strain PALA7]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.357 |
96.552 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.65 |
97.586 |
0.514 |
| pilD | Acinetobacter nosocomialis M2 |
50.53 |
97.586 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.53 |
97.586 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
48.921 |
95.862 |
0.469 |