Detailed information NTG0732899

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PALA4_RS25585
• Genome accession: NZ_CP104866
• Coordinates: 5506811..5508028 (+)
• Length: 405 a.a.
• NCBI ID: WP_003107299.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5501811..5513028

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA4_RS25560 (PALA4_05056)	nadC	5501932..5502780 (+)	849	WP_003110344.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PALA4_RS25570 (PALA4_05058)	-	5502961..5504346 (-)	1386	WP_020751089.1	O-antigen ligase family protein	-
PALA4_RS25575 (PALA4_05059)	-	5504412..5504876 (-)	465	WP_003111216.1	pilin	-
PALA4_RS25580 (PALA4_05060)	pilB	5505107..5506807 (+)	1701	WP_003111215.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA4_RS25585 (PALA4_05061)	pilC	5506811..5508028 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PALA4_RS25590 (PALA4_05062)	pilD	5508029..5508901 (+)	873	WP_003111214.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA4_RS25595 (PALA4_05063)	coaE	5508898..5509509 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PALA4_RS25600 (PALA4_05064)	yacG	5509506..5509706 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA4_RS25605 (PALA4_05065)	-	5509743..5509952 (-)	210	WP_003094660.1	hypothetical protein	-
PALA4_RS25610 (PALA4_05066)	-	5510058..5510747 (-)	690	WP_003111213.1	energy-coupling factor ABC transporter permease	-
PALA4_RS25615 (PALA4_05067)	-	5510744..5511214 (-)	471	WP_003094664.1	hypothetical protein	-
PALA4_RS25620 (PALA4_05068)	-	5511211..5511636 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PALA4_RS25625 (PALA4_05069)	-	5511769..5512398 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA4_RS25630 (PALA4_05070)	-	5512395..5512844 (+)	450	WP_003094670.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44001.86 Da
• Isoelectric Point: 9.8103

>NTDB_id=732899 PALA4_RS25585 WP_003107299.1 5506811..5508028(+) (pilC) [Pseudomonas aeruginosa strain PALA4]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVAGGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTMMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=732899 PALA4_RS25585 WP_003107299.1 5506811..5508028(+) (pilC) [Pseudomonas aeruginosa strain PALA4]
ATGGCGGACAAAGCGTTAAAGACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCCCTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCGGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCGATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCAGCCTTCACCATGATGG
TCATCAACATTTCCAACGTACTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTCCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTGTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
TTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.029	100	0.615
pilC	Acinetobacter baumannii D1279779	60.396	99.753	0.602
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.04	99.753	0.459
pilG	Neisseria meningitidis 44/76-A	45.522	99.259	0.452
pilC	Vibrio cholerae strain A1552	41.481	100	0.415
pilC	Vibrio campbellii strain DS40M4	40.648	99.012	0.402
pilC	Thermus thermophilus HB27	38.155	99.012	0.378