Detailed information NTG0732900

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PALA4_RS25590
• Genome accession: NZ_CP104866
• Coordinates: 5508029..5508901 (+)
• Length: 290 a.a.
• NCBI ID: WP_003111214.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5503029..5513901

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA4_RS25575 (PALA4_05059)	-	5504412..5504876 (-)	465	WP_003111216.1	pilin	-
PALA4_RS25580 (PALA4_05060)	pilB	5505107..5506807 (+)	1701	WP_003111215.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA4_RS25585 (PALA4_05061)	pilC	5506811..5508028 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
PALA4_RS25590 (PALA4_05062)	pilD	5508029..5508901 (+)	873	WP_003111214.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA4_RS25595 (PALA4_05063)	coaE	5508898..5509509 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PALA4_RS25600 (PALA4_05064)	yacG	5509506..5509706 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA4_RS25605 (PALA4_05065)	-	5509743..5509952 (-)	210	WP_003094660.1	hypothetical protein	-
PALA4_RS25610 (PALA4_05066)	-	5510058..5510747 (-)	690	WP_003111213.1	energy-coupling factor ABC transporter permease	-
PALA4_RS25615 (PALA4_05067)	-	5510744..5511214 (-)	471	WP_003094664.1	hypothetical protein	-
PALA4_RS25620 (PALA4_05068)	-	5511211..5511636 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
PALA4_RS25625 (PALA4_05069)	-	5511769..5512398 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA4_RS25630 (PALA4_05070)	-	5512395..5512844 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
PALA4_RS25635 (PALA4_05071)	-	5512870..5513040 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31782.80 Da
• Isoelectric Point: 8.0434

>NTDB_id=732900 PALA4_RS25590 WP_003111214.1 5508029..5508901(+) (pilD) [Pseudomonas aeruginosa strain PALA4]
MTLLNYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALSGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=732900 PALA4_RS25590 WP_003111214.1 5508029..5508901(+) (pilD) [Pseudomonas aeruginosa strain PALA4]
ATGACCCTCCTCAACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATACCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTCCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.714	96.552	0.538
pilD	Vibrio campbellii strain DS40M4	54.152	95.517	0.517
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	49.817	94.138	0.469