Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   N5980_RS01905 Genome accession   NZ_CP104651
Coordinates   405037..407202 (+) Length   721 a.a.
NCBI ID   WP_175966239.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400037..412202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS01885 (N5980_01885) pilM 402084..403142 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  N5980_RS01890 (N5980_01890) comN 403142..403780 (+) 639 WP_004787129.1 PilN domain-containing protein Machinery gene
  N5980_RS01895 (N5980_01895) comO 403777..404493 (+) 717 WP_175966241.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5980_RS01900 (N5980_01900) pilP 404493..405020 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  N5980_RS01905 (N5980_01905) pilQ 405037..407202 (+) 2166 WP_175966239.1 type IV pilus secretin PilQ family protein Machinery gene
  N5980_RS01910 (N5980_01910) aroK 407239..407775 (+) 537 WP_175966238.1 shikimate kinase AroK -
  N5980_RS01915 (N5980_01915) aroB 407804..408883 (+) 1080 WP_261635296.1 3-dehydroquinate synthase -
  N5980_RS01920 (N5980_01920) - 408896..409747 (+) 852 WP_261635297.1 hypothetical protein -

Sequence

Protein


Download         Length: 721 a.a.        Molecular weight: 78235.53 Da        Isoelectric Point: 4.9917

>NTDB_id=731239 N5980_RS01905 WP_175966239.1 405037..407202(+) (pilQ) [Acinetobacter variabilis strain 2021CK-01005]
MNKSIKEFIFGDANTMNHVFRQFSMGAVAIAVMQAASAQVSMTNVVPMQIPGQGTEIRVMFNGLPPQPQAYQLESPSRLI
LDFNEAQQNLKQSSIPVATAEASSVDVSSDAQRSRLTVNLANAGAFTTRVEGNTFILKINSATPVAIAQPVQQQVVQGIT
NIGFQRGAQGEGLVVIDLAGQNTPVDVQQQGTKVIVRTLGSKIPAHLTRRLNVNDFATPVSTVDAVNQNGSGMITIQSAE
SYEYMAFQTDNKLTISLKRPEVKGPLRPKSVAYTGKKISLDFQDIEVRRVLQLLADFTDINMVAADSVQGNITLRLKEVP
WDQALDIVLKTKNLDKRRNGNVIWIAPVAELIKAEEEEAKALKQSVALAPIQTEYMQLSYAKAADIEKLITQNKSASGSG
SSNGTSNNDDRESLLSSRGSISIDARTNTIIVNDTQPFIDKIRNMVDLLDVQVKQVMVEARIVRATTDFTKEMGVKWGIL
SQGITNNNHLLVGGSDTTLWDLRDPQESDLGGFTYDIQRPDNLNVDLGVTSQGASRIAFGLISLSDFMLDLELSALQADG
YGEVISTPKVLTADKQKATVASGSQIPYQSSEGGGANAVSTTEFIDATLSLDVTPSITPDGKVQMELNITSDSPGNPTPT
GQLTINKNQINTNVLVDNGETVVLGGIFEQETRNAQTKVPFLGDLPYLGRLFRKDVKSDNKRELLIFVTPRIVNDSVSRN
H

Nucleotide


Download         Length: 2166 bp        

>NTDB_id=731239 N5980_RS01905 WP_175966239.1 405037..407202(+) (pilQ) [Acinetobacter variabilis strain 2021CK-01005]
ATGAATAAGAGTATTAAAGAATTTATTTTTGGGGATGCTAATACAATGAATCATGTGTTTCGTCAGTTTTCTATGGGGGC
TGTCGCGATTGCTGTGATGCAAGCAGCGAGTGCGCAGGTTTCAATGACCAATGTGGTACCAATGCAGATTCCTGGACAGG
GAACTGAAATCCGAGTGATGTTTAATGGTCTGCCACCTCAGCCTCAAGCCTATCAGCTGGAATCTCCATCACGTCTGATT
CTGGATTTTAATGAGGCACAACAAAATCTAAAACAGTCTAGTATTCCAGTTGCGACTGCTGAAGCCAGTTCAGTGGATGT
TAGCTCAGATGCACAGCGTTCTCGACTGACGGTGAATCTCGCTAATGCAGGTGCATTTACGACACGTGTGGAAGGCAATA
CCTTTATTTTAAAAATTAATTCTGCTACTCCAGTTGCTATTGCTCAGCCTGTACAACAGCAGGTCGTTCAAGGGATTACC
AATATTGGTTTCCAGCGGGGTGCGCAAGGTGAAGGACTGGTGGTAATTGATCTGGCAGGTCAGAACACACCAGTCGATGT
ACAGCAGCAGGGAACCAAAGTGATTGTGCGGACTCTGGGCTCCAAGATTCCGGCACATTTGACCCGACGTTTGAATGTGA
ATGATTTTGCCACGCCTGTTTCAACCGTAGATGCAGTCAACCAGAATGGATCAGGCATGATTACCATTCAGTCTGCGGAA
AGCTATGAATATATGGCTTTCCAGACAGATAATAAGCTGACTATCAGTTTGAAGCGTCCAGAAGTTAAAGGGCCTTTACG
TCCTAAATCAGTCGCTTATACAGGTAAGAAGATTTCTCTAGATTTTCAGGATATTGAAGTCCGTCGAGTTCTACAGTTAT
TAGCCGATTTTACCGATATCAATATGGTTGCTGCAGATAGCGTACAGGGTAATATTACCTTACGCCTCAAGGAAGTTCCT
TGGGATCAGGCTTTAGATATTGTATTAAAAACCAAAAATCTGGATAAGCGTCGTAATGGTAATGTGATCTGGATTGCACC
AGTGGCAGAATTAATTAAGGCTGAAGAGGAAGAAGCTAAGGCCTTAAAGCAAAGTGTTGCACTTGCGCCGATTCAAACTG
AATATATGCAGCTCAGTTATGCAAAAGCAGCAGATATTGAAAAACTGATTACTCAAAATAAGAGCGCATCAGGATCAGGG
AGTTCGAATGGCACGAGTAACAATGATGATAGAGAAAGTTTATTAAGTTCACGTGGCTCTATCTCTATTGATGCCCGTAC
CAATACGATTATTGTGAATGATACCCAGCCTTTCATTGATAAAATCCGTAATATGGTCGATCTGCTTGATGTGCAAGTGA
AACAGGTGATGGTTGAGGCGCGTATCGTTCGTGCAACTACTGACTTTACCAAAGAAATGGGTGTGAAATGGGGAATCCTG
TCTCAAGGGATTACCAATAATAATCACCTTCTTGTGGGGGGGAGTGACACTACCCTATGGGATTTGAGAGACCCTCAGGA
AAGTGATCTAGGCGGATTTACCTATGATATTCAGCGCCCAGATAACCTGAATGTAGATTTAGGGGTAACCAGTCAAGGGG
CTAGCCGTATTGCTTTTGGCTTAATTAGCCTTTCGGATTTTATGCTGGATCTTGAACTTTCTGCGCTACAGGCAGACGGT
TATGGTGAAGTGATTTCTACGCCAAAAGTGCTCACTGCTGACAAGCAAAAAGCGACTGTGGCATCTGGTTCCCAAATTCC
TTATCAGTCTTCAGAAGGCGGTGGTGCTAATGCAGTGTCGACTACAGAGTTTATTGATGCAACTTTAAGTTTGGACGTTA
CACCAAGTATTACGCCAGATGGCAAGGTGCAAATGGAGTTGAATATAACCAGTGACTCACCAGGAAATCCGACACCAACT
GGACAGTTAACCATTAATAAAAACCAGATCAATACTAATGTACTGGTTGATAATGGTGAAACAGTGGTGTTAGGTGGTAT
TTTTGAGCAAGAAACTCGAAATGCGCAAACTAAAGTTCCTTTCTTGGGTGATCTACCTTATTTAGGTCGTTTGTTCCGTA
AAGATGTTAAATCAGATAACAAGCGTGAGTTGCTGATTTTTGTTACACCTCGAATTGTTAATGACAGTGTTTCAAGAAAT
CATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(555-713)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-455)

AMIN domain (AMIN)

(55-137)

Secretin and TonB N terminus short domain (STN)

(305-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

72.988

100

0.742
  pilQ Acinetobacter baumannii strain A118

72.851

100

0.741
  comQ Acinetobacter baylyi ADP1

70.236

99.723

0.7
  pilQ Pseudomonas aeruginosa PAK

41.523

96.533

0.401
  pilQ Legionella pneumophila strain Lp02

37.11

97.92

0.363
  pilQ Legionella pneumophila strain ERS1305867

37.143

97.087

0.361