Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   N5980_RS01890 Genome accession   NZ_CP104651
Coordinates   403142..403780 (+) Length   212 a.a.
NCBI ID   WP_004787129.1    Uniprot ID   N8WR61
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 398142..408780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS01875 (N5980_01875) - 398527..399330 (+) 804 WP_175966244.1 putative RNA methyltransferase -
  N5980_RS01880 (N5980_01880) ponA 399389..401917 (-) 2529 WP_175966243.1 penicillin-binding protein PBP1a -
  N5980_RS01885 (N5980_01885) pilM 402084..403142 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  N5980_RS01890 (N5980_01890) comN 403142..403780 (+) 639 WP_004787129.1 PilN domain-containing protein Machinery gene
  N5980_RS01895 (N5980_01895) comO 403777..404493 (+) 717 WP_175966241.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5980_RS01900 (N5980_01900) pilP 404493..405020 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  N5980_RS01905 (N5980_01905) pilQ 405037..407202 (+) 2166 WP_175966239.1 type IV pilus secretin PilQ family protein Machinery gene
  N5980_RS01910 (N5980_01910) aroK 407239..407775 (+) 537 WP_175966238.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23776.99 Da        Isoelectric Point: 4.7909

>NTDB_id=731236 N5980_RS01890 WP_004787129.1 403142..403780(+) (comN) [Acinetobacter variabilis strain 2021CK-01005]
MAKINLLPWRDELRIKRNNEFVAICAGALFLGLAAAGSTWFYYDQKLQDQEQANQLVISTNQNLDVQLKALDGLQDQRNA
IVERMKLIQGLQTQRPIAVHLIDEIVRVTPSNMYITKFQRTGDKFTIEGKAESPNTVAELLRNLEASTWYRNAFMNAFLV
AEEPKDKAPSSVIPRVEESYGSFTVTVDLDQIAEPTLKEGQTPVTTTAEASS

Nucleotide


Download         Length: 639 bp        

>NTDB_id=731236 N5980_RS01890 WP_004787129.1 403142..403780(+) (comN) [Acinetobacter variabilis strain 2021CK-01005]
ATGGCAAAGATTAACTTACTCCCTTGGCGCGATGAGCTAAGAATTAAAAGAAATAATGAATTTGTAGCGATTTGTGCCGG
GGCACTTTTTCTAGGATTGGCAGCAGCAGGTTCAACCTGGTTCTATTACGATCAAAAACTTCAGGATCAGGAACAGGCCA
ATCAGCTGGTGATCAGTACTAACCAGAATCTGGATGTACAGCTGAAAGCATTGGATGGTTTACAAGACCAGCGTAATGCA
ATTGTTGAACGTATGAAGCTGATTCAGGGTTTACAGACTCAACGGCCGATCGCAGTTCACCTGATTGATGAAATTGTACG
GGTCACACCAAGCAATATGTACATTACCAAATTCCAGCGTACCGGCGATAAATTCACCATTGAAGGTAAGGCGGAAAGTC
CGAATACAGTGGCTGAATTGCTACGTAATCTGGAGGCTTCTACCTGGTATCGTAATGCATTTATGAATGCTTTCCTGGTT
GCTGAAGAACCAAAAGATAAAGCGCCATCATCAGTGATTCCTCGAGTGGAAGAATCTTATGGCAGCTTTACGGTCACGGT
TGATCTGGATCAAATCGCTGAGCCAACACTTAAAGAAGGACAAACACCAGTCACAACTACAGCGGAGGCATCATCATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8WR61

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Acinetobacter baylyi ADP1

70.531

97.642

0.689
  pilN Acinetobacter baumannii D1279779

68.293

96.698

0.66