Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   N5980_RS01900 Genome accession   NZ_CP104651
Coordinates   404493..405020 (+) Length   175 a.a.
NCBI ID   WP_034169727.1    Uniprot ID   -
Organism   Acinetobacter variabilis strain 2021CK-01005     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 399493..410020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5980_RS01885 (N5980_01885) pilM 402084..403142 (+) 1059 WP_004787132.1 pilus assembly protein PilM Machinery gene
  N5980_RS01890 (N5980_01890) comN 403142..403780 (+) 639 WP_004787129.1 PilN domain-containing protein Machinery gene
  N5980_RS01895 (N5980_01895) comO 403777..404493 (+) 717 WP_175966241.1 type 4a pilus biogenesis protein PilO Machinery gene
  N5980_RS01900 (N5980_01900) pilP 404493..405020 (+) 528 WP_034169727.1 pilus assembly protein PilP Machinery gene
  N5980_RS01905 (N5980_01905) pilQ 405037..407202 (+) 2166 WP_175966239.1 type IV pilus secretin PilQ family protein Machinery gene
  N5980_RS01910 (N5980_01910) aroK 407239..407775 (+) 537 WP_175966238.1 shikimate kinase AroK -
  N5980_RS01915 (N5980_01915) aroB 407804..408883 (+) 1080 WP_261635296.1 3-dehydroquinate synthase -
  N5980_RS01920 (N5980_01920) - 408896..409747 (+) 852 WP_261635297.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19402.56 Da        Isoelectric Point: 7.1662

>NTDB_id=731238 N5980_RS01900 WP_034169727.1 404493..405020(+) (pilP) [Acinetobacter variabilis strain 2021CK-01005]
MNIIKITSALTLGFLLVGCESRIDAVNQEMANIRNQPPLPIEPAPDFIPTEMFNYAAHQLKSPFLPSSLAAELKIMAGKR
VYPNLSRQLQPLESYPLETLSMKGSMRNQAGQILALIQTPDGEIERIQRGSYMGLNHGRVTRITPTQIDLIEIIPDGREG
YVERPRSLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=731238 N5980_RS01900 WP_034169727.1 404493..405020(+) (pilP) [Acinetobacter variabilis strain 2021CK-01005]
ATGAATATCATTAAAATTACTTCAGCTTTAACGCTCGGATTTTTATTGGTGGGCTGTGAATCAAGAATTGATGCAGTCAA
TCAGGAAATGGCCAATATTCGTAATCAACCGCCATTACCGATTGAACCGGCGCCGGATTTTATTCCGACAGAAATGTTTA
ATTACGCAGCTCATCAGCTGAAAAGTCCTTTCCTGCCAAGCTCTTTAGCAGCCGAATTGAAAATTATGGCAGGTAAGCGA
GTTTATCCCAACTTGTCACGCCAATTACAGCCTTTAGAAAGCTATCCACTCGAAACCTTAAGCATGAAAGGTAGTATGCG
GAATCAGGCGGGGCAGATTCTGGCTCTAATTCAAACGCCTGATGGGGAAATTGAACGGATACAACGTGGCAGCTATATGG
GACTTAATCATGGTCGTGTAACGAGAATTACGCCGACACAGATTGACTTGATTGAGATTATTCCAGATGGCCGTGAGGGA
TATGTGGAACGTCCACGAAGTCTGGTTTTGATTGGACCAGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

77.714

100

0.777
  comL Acinetobacter baylyi ADP1

71.598

96.571

0.691