Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N5O86_RS05870 Genome accession   NZ_CP104581
Coordinates   1294862..1296079 (-) Length   405 a.a.
NCBI ID   WP_016445610.1    Uniprot ID   A0AAJ1HZR1
Organism   Delftia tsuruhatensis strain GD03927     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1289862..1301079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5O86_RS05840 (N5O86_05840) - 1290693..1291649 (+) 957 WP_046986120.1 ATP-binding protein -
  N5O86_RS05845 (N5O86_05845) - 1291700..1292206 (+) 507 WP_016445605.1 NUDIX domain-containing protein -
  N5O86_RS05850 (N5O86_05850) - 1292217..1292453 (-) 237 WP_223275109.1 DNA gyrase inhibitor YacG -
  N5O86_RS05855 (N5O86_05855) zapD 1292471..1293226 (-) 756 WP_016445607.1 cell division protein ZapD -
  N5O86_RS05860 (N5O86_05860) coaE 1293316..1293954 (-) 639 WP_250438418.1 dephospho-CoA kinase -
  N5O86_RS05865 (N5O86_05865) pilD 1293969..1294862 (-) 894 WP_016445609.1 A24 family peptidase Machinery gene
  N5O86_RS05870 (N5O86_05870) pilC 1294862..1296079 (-) 1218 WP_016445610.1 type II secretion system F family protein Machinery gene
  N5O86_RS05875 (N5O86_05875) pilB 1296118..1297860 (-) 1743 WP_016445611.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N5O86_RS05885 (N5O86_05885) - 1298097..1299026 (-) 930 WP_016451025.1 polyprenyl synthetase family protein -
  N5O86_RS05890 (N5O86_05890) rplU 1299257..1299568 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  N5O86_RS05895 (N5O86_05895) rpmA 1299584..1299841 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44446.30 Da        Isoelectric Point: 9.3922

>NTDB_id=730679 N5O86_RS05870 WP_016445610.1 1294862..1296079(-) (pilC) [Delftia tsuruhatensis strain GD03927]
MATAASKGIKEFVFEWEGKDRNGKIIRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKRIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNPSVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVIVVAFIVVTIIMIFVIPAFKEVFTSFGADLPAPTLFVMGISDVFVQWWWLIFGVIGGGLYFFM
QAWKRNERMQQFMDRTLLKVPVFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=730679 N5O86_RS05870 WP_016445610.1 1294862..1296079(-) (pilC) [Delftia tsuruhatensis strain GD03927]
ATGGCCACAGCCGCGTCCAAGGGAATCAAGGAATTTGTCTTCGAATGGGAAGGCAAGGATCGCAACGGCAAGATCATCCG
AGGCGAGACCCGGGCCGGGGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTGCCCAGCAAGATCAAGA
AGCGCCGCACACGCGGCGGCAAGAGGATCAAGCCCAAGGACATTGCGCTGTTCACCCGCCAGATGGCAACGATGATGAAG
GCGGGCGTCCCGCTGCTTCAGGCCTTCGACATTGTCGGACGGGGCAACACCAACCCCAGCGTGACGCGCCTTCTGGCCGA
TATTCGCGCCGACGTGGAGACCGGCACCTCGCTGAACGCGGCCTATCGCAAGCACCCCATGTACTTCGATAGCCTCTACT
GCAATCTGGTGGAGGCGGGCGAAGCGGCCGGTATCCTGGAAGCCCTGCTGGACCGCCTGGCCACGTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAATCGGCGCTGATGTACCCGATCTCGGTCATCGTCGTGGCCTTCATCGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAGGAAGTGTTCACCTCGTTCGGCGCCGACCTGCCGGCACCGACGCTGTTCG
TGATGGGCATCAGCGATGTCTTTGTCCAATGGTGGTGGTTGATCTTCGGCGTGATTGGCGGCGGTCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAATTCATGGACCGTACGCTGCTGAAGGTGCCGGTCTTTGGCGTGCTGAT
CGAGAAATCCTGCGTCGCACGCTGGACGCGCACGCTGTCGACCATGTTTGCCGCGGGCGTCCCATTGGTCGAGGCACTGG
ATTCTGTCGGCGGCGCATCCGGCAATGCCGTGTATGCCAATGCCACGGAAAAGATCCAGCAGGAAGTCTCCACCGGCACC
AGTCTCACCGTGGCCATGACCAATGCCAATGTCTTTCCGTCCATGGTGCTGCAGATGTGCGCCATCGGCGAGGAATCCGG
CTCCATCGACCATATGCTGGGCAAGGCGGCCGATTTCTATGAAGAAGAGGTCGATGACATGGTGGCTGGCCTGTCCAGCC
TGATGGAGCCCATCATCATTGTTTTCCTGGGCACCCTCATCGGCGGCATCGTGGTTTCGATGTATCTGCCCATCTTCAAG
CTGGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.198

99.753

0.551
  pilG Neisseria gonorrhoeae MS11

50.25

98.765

0.496
  pilG Neisseria meningitidis 44/76-A

50

98.765

0.494
  pilC Legionella pneumophila strain ERS1305867

50.253

97.778

0.491
  pilC Acinetobacter baylyi ADP1

49.246

98.272

0.484
  pilC Acinetobacter baumannii D1279779

47.859

98.025

0.469
  pilC Vibrio cholerae strain A1552

40.302

98.025

0.395
  pilC Vibrio campbellii strain DS40M4

39.295

98.025

0.385
  pilC Thermus thermophilus HB27

37.5

98.765

0.37