Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N4261_RS22755 Genome accession   NZ_CP104562
Coordinates   5485162..5486397 (+) Length   411 a.a.
NCBI ID   WP_261757526.1    Uniprot ID   -
Organism   Roseateles amylovorans strain BIM B-1768     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5480162..5491397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4261_RS22730 (N4261_22755) rpmA 5480468..5480725 (-) 258 WP_261757523.1 50S ribosomal protein L27 -
  N4261_RS22735 (N4261_22760) rplU 5480762..5481073 (-) 312 WP_261757524.1 50S ribosomal protein L21 -
  N4261_RS22740 (N4261_22765) - 5481648..5482577 (+) 930 WP_261760823.1 polyprenyl synthetase family protein -
  N4261_RS22750 (N4261_22775) pilB 5483235..5485010 (+) 1776 WP_261757525.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N4261_RS22755 (N4261_22780) pilC 5485162..5486397 (+) 1236 WP_261757526.1 type II secretion system F family protein Machinery gene
  N4261_RS22760 (N4261_22785) - 5486398..5487342 (+) 945 WP_261757527.1 A24 family peptidase -
  N4261_RS22765 (N4261_22790) coaE 5487517..5488116 (+) 600 WP_261757528.1 dephospho-CoA kinase -
  N4261_RS22770 (N4261_22795) zapD 5488216..5488971 (+) 756 WP_261760824.1 cell division protein ZapD -
  N4261_RS22775 (N4261_22800) - 5489025..5489249 (+) 225 WP_261757529.1 DNA gyrase inhibitor YacG -
  N4261_RS22780 (N4261_22805) - 5489348..5489968 (-) 621 WP_261757530.1 HAD family phosphatase -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 45008.75 Da        Isoelectric Point: 9.9280

>NTDB_id=730599 N4261_RS22755 WP_261757526.1 5485162..5486397(+) (pilC) [Roseateles amylovorans strain BIM B-1768]
MATTTAGARNSKQGIKEFIYEWEGKDRNGKMVRGEMRAGGEAVVSASLRRQGILVSKVKKRRTGGGKSIKQKDISVFTRQ
LATMMRAGVPLLQAFDIVARGSTNPRMTKLLNDIRQDVETGTSLSVAFRKHPMHFDALYCNLVEAGESGGILEALLDRLA
IYQEKTVALKGKIKSALTYPIAVMVAAFVVTAIIMIFVVPTFRDVFKSFGADLPAPTLFVIWLSEIFVNYWYIIFAAVGG
GVYFFFESWKRSERMQKFMDRLLLKVPIFGPLIYKSAVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFQEATEKIQR
DVSTGASLTTSMQTTGIFPVMVLQMSSIGEESGSLDHMLGKAADFYEEEVDEAVKALSSLMEPLIIVFLGTLIGGIVVAM
YLPIFKLGAVV

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=730599 N4261_RS22755 WP_261757526.1 5485162..5486397(+) (pilC) [Roseateles amylovorans strain BIM B-1768]
ATGGCGACGACCACCGCAGGTGCCCGCAACAGCAAGCAGGGCATCAAGGAATTCATCTACGAGTGGGAAGGCAAGGACCG
CAACGGCAAGATGGTCCGGGGCGAGATGCGCGCCGGAGGTGAAGCCGTGGTCAGCGCCTCGCTGCGTCGCCAGGGCATCC
TGGTCAGCAAGGTCAAGAAGCGCCGCACCGGCGGCGGGAAGTCCATCAAGCAGAAGGACATCTCCGTCTTCACCCGCCAG
CTCGCCACCATGATGCGCGCCGGCGTGCCGCTGCTGCAGGCGTTCGACATCGTCGCCCGCGGCAGCACCAACCCGCGCAT
GACCAAGCTGCTCAACGACATCCGTCAGGATGTCGAGACCGGTACCAGCCTGTCGGTGGCCTTCCGCAAGCATCCGATGC
ACTTCGATGCGCTGTACTGCAACCTCGTCGAAGCCGGCGAGTCGGGCGGTATCCTGGAAGCCTTGCTGGATCGTCTGGCG
ATCTACCAGGAAAAGACAGTCGCCCTGAAGGGCAAGATCAAGAGCGCGCTGACCTACCCGATCGCGGTGATGGTGGCCGC
CTTCGTCGTGACCGCGATCATCATGATCTTCGTGGTCCCGACCTTCCGCGACGTGTTCAAGTCGTTCGGCGCCGACCTGC
CGGCACCAACGCTGTTCGTGATCTGGCTGTCGGAAATCTTCGTCAACTACTGGTACATCATCTTCGCGGCCGTGGGTGGC
GGGGTGTACTTCTTCTTCGAGAGCTGGAAGCGCTCGGAGCGGATGCAGAAGTTCATGGACCGGCTGCTGCTGAAAGTGCC
GATCTTCGGCCCGCTGATCTACAAGTCCGCGGTCGCCCGCTGGACCCGCACCTTGTCGACGATGTTCGCCGCCGGTGTGC
CGCTGGTCGAAGCGCTGGACTCGGTGGGCGGTGCCTCGGGCAATGCCGTCTTCCAAGAGGCCACCGAGAAGATCCAGCGT
GATGTCTCCACCGGCGCCTCGCTGACCACCTCGATGCAGACCACCGGGATCTTCCCGGTCATGGTGCTGCAGATGTCGTC
CATCGGTGAAGAATCCGGCTCGCTGGACCACATGCTGGGCAAGGCCGCCGACTTCTATGAAGAAGAGGTCGACGAGGCCG
TCAAGGCGCTGTCCAGCCTGATGGAGCCTTTGATCATCGTGTTCCTGGGTACCTTGATCGGCGGCATCGTGGTCGCCATG
TACCTGCCCATCTTCAAGCTCGGCGCGGTGGTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(281-403)

Type II secretion system (T2SS), protein F (T2SSF)

(77-200)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.693

98.297

0.547
  pilC Legionella pneumophila strain ERS1305867

53.283

96.35

0.513
  pilG Neisseria gonorrhoeae MS11

52.02

96.35

0.501
  pilG Neisseria meningitidis 44/76-A

52.02

96.35

0.501
  pilC Acinetobacter baumannii D1279779

50.126

96.594

0.484
  pilC Acinetobacter baylyi ADP1

49.749

96.837

0.482
  pilC Vibrio cholerae strain A1552

43.108

97.08

0.418
  pilC Vibrio campbellii strain DS40M4

41.147

97.567

0.401
  pilC Thermus thermophilus HB27

39.098

97.08

0.38