Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N5E84_RS10365 Genome accession   NZ_CP104554
Coordinates   2266356..2267582 (+) Length   408 a.a.
NCBI ID   WP_069212069.1    Uniprot ID   A0A7U5ILT6
Organism   Vibrio sp. J502     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2261356..2272582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5E84_RS10340 (N5E84_10340) fldB 2261826..2262344 (+) 519 WP_013857680.1 flavodoxin FldB -
  N5E84_RS10345 (N5E84_10345) ampD 2262366..2262917 (-) 552 WP_214650766.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  N5E84_RS10350 (N5E84_10350) nadC 2263042..2263929 (+) 888 WP_019281900.1 carboxylating nicotinate-nucleotide diphosphorylase -
  N5E84_RS10355 (N5E84_10355) - 2264185..2264619 (+) 435 WP_050934217.1 type IV pilin protein -
  N5E84_RS10360 (N5E84_10360) pilB 2264625..2266313 (+) 1689 WP_029388146.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N5E84_RS10365 (N5E84_10365) pilC 2266356..2267582 (+) 1227 WP_069212069.1 type II secretion system F family protein Machinery gene
  N5E84_RS10370 (N5E84_10370) pilD 2267621..2268502 (+) 882 WP_019281902.1 prepilin peptidase Machinery gene
  N5E84_RS10375 (N5E84_10375) coaE 2268493..2269101 (+) 609 WP_013857688.1 dephospho-CoA kinase -
  N5E84_RS10380 (N5E84_10380) zapD 2269134..2269874 (+) 741 WP_019281903.1 cell division protein ZapD -
  N5E84_RS10385 (N5E84_10385) yacG 2269964..2270161 (+) 198 WP_010319526.1 DNA gyrase inhibitor YacG -
  N5E84_RS10390 (N5E84_10390) rplS 2270231..2270584 (-) 354 WP_010319525.1 50S ribosomal protein L19 -
  N5E84_RS10395 (N5E84_10395) trmD 2270626..2271372 (-) 747 WP_010319524.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  N5E84_RS10400 (N5E84_10400) rimM 2271400..2271954 (-) 555 WP_013857691.1 ribosome maturation factor RimM -
  N5E84_RS10405 (N5E84_10405) rpsP 2271984..2272232 (-) 249 WP_010319522.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45313.66 Da        Isoelectric Point: 10.4379

>NTDB_id=730439 N5E84_RS10365 WP_069212069.1 2266356..2267582(+) (pilC) [Vibrio sp. J502]
MNTKIKSELKNYRWKGINSSGKKVSGQTLALTELEVRDKLKEQHIQIKKIKKGGVSFITRLTHRVKARDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILSQVTKGVEAGTPISKAMRTASTHFDTLYVDLIHTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPTMVVLVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQVLKLSHWVQSYSLWVIIIIILTTIA
VKAVRQKSFLIRLKTSRLGLKFPILGGVIGKASIAKFSRTLATSFSTGIPILASLKTTAKTAGNVHFETAINEVYRDTAA
GMPMYIAMRNTEAFPEMVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGTVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=730439 N5E84_RS10365 WP_069212069.1 2266356..2267582(+) (pilC) [Vibrio sp. J502]
ATGAACACAAAAATCAAATCAGAACTCAAAAATTATCGTTGGAAAGGCATCAATAGTTCGGGCAAAAAAGTATCTGGCCA
AACTCTCGCTTTAACCGAACTGGAAGTGCGTGACAAACTTAAAGAACAGCACATTCAGATCAAAAAAATCAAAAAAGGGG
GCGTCTCTTTTATCACCCGCTTGACTCATCGCGTGAAGGCCAGAGACATCACCATTCTGACACGCCAATTGGCGACCATG
CTGACCACGGGCGTGCCCATCGTGCAAGCCTTAAAACTGGTCGGAGATAACCATCGCAAAGCCGAAATGAAATCCATTTT
GTCGCAAGTCACCAAAGGGGTTGAAGCCGGAACGCCAATTTCCAAAGCGATGCGTACCGCCAGCACCCATTTCGATACCT
TGTATGTTGATCTCATTCACACAGGTGAACAGTCAGGTAACTTGGCTGAAGTGTTTGAGCGGCTAGCGACTTATCGAGAA
AAAAGTGAACAACTGCGCGCTAAAGTCATTAAAGCACTCATCTACCCAACCATGGTGGTGTTGGTCGCGTTAGGTGTTTC
TTACTTAATGCTTACTATGGTGATCCCTGAGTTTGAAAGCATGTTCAAAGGATTCGGAGCCGAATTACCTTGGTTTACAC
AGCAAGTATTGAAACTCTCTCATTGGGTGCAAAGTTACAGTTTGTGGGTAATCATCATCATAATCCTCACCACAATTGCC
GTGAAAGCAGTACGGCAAAAATCTTTTTTAATACGCTTAAAAACCAGCCGATTAGGATTAAAGTTTCCCATTCTTGGCGG
GGTGATAGGCAAAGCCTCTATTGCTAAATTCAGTCGCACACTCGCCACCAGTTTTAGTACAGGCATTCCGATTTTAGCCA
GCTTAAAAACCACCGCTAAAACCGCTGGCAATGTCCATTTTGAGACGGCGATTAATGAGGTCTATCGTGATACGGCAGCC
GGTATGCCAATGTATATTGCGATGCGTAATACCGAAGCCTTTCCTGAAATGGTGCTGCAAATGGTGATGATTGGTGAAGA
ATCAGGCCGATTGGATGACATGCTCAATAAAGTCGCCACCATTTACGAATTTGAAGTCGATAATACCGTCGATAACTTAG
GCAAAATTCTCGAACCATTGATCATTGTCTTTTTGGGTACGGTGGTCGGCGGTTTAGTGGTGGCAATGTACTTGCCCATC
TTTAACTTAATGAGTGTATTAGGATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U5ILT6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

88.5

98.039

0.868
  pilC Vibrio campbellii strain DS40M4

75

99.02

0.743
  pilC Acinetobacter baumannii D1279779

40.931

100

0.409
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

40.657

97.059

0.395
  pilG Neisseria gonorrhoeae MS11

39.801

98.529

0.392
  pilC Legionella pneumophila strain ERS1305867

39.651

98.284

0.39
  pilG Neisseria meningitidis 44/76-A

39.454

98.775

0.39