Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GZI12_RS02025 Genome accession   NZ_AP019651
Coordinates   402221..403438 (-) Length   405 a.a.
NCBI ID   WP_162045549.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 397221..408438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS01985 rpsP 397390..397638 (+) 249 WP_162045543.1 30S ribosomal protein S16 -
  GZI12_RS01990 rimM 397667..398215 (+) 549 WP_075715362.1 ribosome maturation factor RimM -
  GZI12_RS01995 trmD 398243..398983 (+) 741 WP_162045544.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  GZI12_RS02000 rplS 399029..399382 (+) 354 WP_038173824.1 50S ribosomal protein L19 -
  GZI12_RS02005 yacG 399669..399863 (-) 195 WP_162045545.1 DNA gyrase inhibitor YacG -
  GZI12_RS02010 zapD 399917..400657 (-) 741 WP_162045546.1 cell division protein ZapD -
  GZI12_RS02015 coaE 400692..401300 (-) 609 WP_162045547.1 dephospho-CoA kinase -
  GZI12_RS02020 pilD 401302..402171 (-) 870 WP_162045548.1 A24 family peptidase Machinery gene
  GZI12_RS02025 pilC 402221..403438 (-) 1218 WP_162045549.1 type II secretion system F family protein Machinery gene
  GZI12_RS02030 pilB 403448..405130 (-) 1683 WP_162045550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GZI12_RS02035 pilA 405133..405543 (-) 411 WP_162045551.1 type IV pilin subunit protein Machinery gene
  GZI12_RS02040 mutS 405794..408361 (-) 2568 WP_162045552.1 DNA mismatch repair protein MutS -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 45211.52 Da        Isoelectric Point: 10.1788

>NTDB_id=73034 GZI12_RS02025 WP_162045549.1 402221..403438(-) (pilC) [Vibrio taketomensis strain C4III291]
MKRPIELKNYRWRGVNSAGKPASGYILALTESEVRDKLKQQKVRVKSLVPRNVSFFRKHFEKIKGKDITLLTRQLSTMIN
TGIPIIQAFKLVADNHQKAEMKSLLLSICKSIESGTPLSTSLKVSPHFDALYIDLVASGEASGNLGEVFKRIATYREKSE
QLRAKVVKAMIYPSMVMLVALVVSYLMLTMVIPQFEDMFVGFGSELPWFTQQVLKVSDFTQDYSLFLFGLIATTVIVVKI
LSKRSYRFRLALSRLSLRIPVIGTVISKAAIAKFSRTLATSFGAGIPILSCLKTSARTANQLHYQTALETVHQDTAAGMP
LYLAMRHSNVFPEMTLQMVMIGEESGRLDEMLNKVATIYEIEIDDTVDNLGKILEPMIIVFLSLVVGSLVVAIYLPIFNL
MSVIG

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=73034 GZI12_RS02025 WP_162045549.1 402221..403438(-) (pilC) [Vibrio taketomensis strain C4III291]
ATGAAGCGCCCAATTGAATTAAAAAACTACCGCTGGCGCGGAGTTAACAGTGCAGGTAAACCTGCCTCTGGCTATATTTT
AGCGCTGACCGAATCCGAAGTGCGTGACAAACTCAAACAGCAAAAAGTGCGAGTGAAGAGCCTTGTACCACGCAACGTTT
CATTTTTCCGTAAGCATTTTGAAAAGATCAAAGGGAAAGACATCACCTTACTGACGCGTCAGCTTTCCACCATGATCAAT
ACCGGTATTCCGATCATTCAGGCATTTAAGTTAGTGGCGGATAACCATCAAAAAGCAGAAATGAAATCGTTACTGCTCTC
GATCTGTAAAAGCATTGAATCAGGTACGCCCCTATCTACATCCTTAAAAGTTAGCCCTCATTTTGATGCATTGTATATCG
ACCTCGTCGCTTCAGGCGAAGCGTCAGGTAACCTTGGCGAAGTATTTAAACGTATTGCAACTTATCGAGAAAAGTCCGAG
CAACTAAGAGCTAAAGTGGTCAAAGCAATGATCTACCCAAGCATGGTTATGTTGGTTGCCTTGGTGGTAAGCTATTTAAT
GCTCACCATGGTGATTCCCCAATTTGAAGATATGTTTGTTGGCTTTGGTTCAGAATTACCTTGGTTTACTCAACAGGTAC
TTAAAGTCTCCGATTTCACCCAAGACTACAGTCTGTTTCTGTTCGGTCTTATTGCTACCACGGTCATCGTTGTCAAAATA
CTTAGCAAACGCTCTTATAGATTTAGATTGGCATTGAGTCGACTAAGCCTACGTATTCCGGTTATTGGCACCGTAATATC
TAAAGCCGCTATTGCGAAGTTTAGCCGGACGCTCGCCACCAGCTTTGGGGCAGGTATTCCGATTCTATCTTGTTTAAAGA
CCTCTGCTCGCACTGCAAACCAATTGCACTATCAAACGGCGCTGGAAACGGTACACCAAGACACTGCTGCTGGTATGCCT
CTGTATTTGGCGATGCGCCACAGTAATGTCTTTCCTGAAATGACACTACAAATGGTGATGATCGGCGAAGAATCTGGCCG
CTTAGATGAAATGTTAAATAAAGTCGCCACCATTTATGAAATTGAGATTGATGATACCGTCGATAACTTGGGTAAAATTC
TTGAGCCTATGATCATCGTATTCTTAAGTTTGGTAGTCGGTAGCCTCGTAGTTGCGATCTATTTACCAATCTTTAACTTG
ATGAGTGTTATAGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-193)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

66.75

98.765

0.659
  pilC Vibrio campbellii strain DS40M4

63.092

99.012

0.625
  pilC Acinetobacter baumannii D1279779

40.247

100

0.402
  pilC Acinetobacter baylyi ADP1

40.806

98.025

0.4
  pilC Legionella pneumophila strain ERS1305867

40.1

98.519

0.395
  pilG Neisseria meningitidis 44/76-A

39.152

99.012

0.388
  pilC Pseudomonas stutzeri DSM 10701

38.119

99.753

0.38
  pilG Neisseria gonorrhoeae MS11

38.596

98.519

0.38

Multiple sequence alignment