Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   GZI12_RS02035 Genome accession   NZ_AP019651
Coordinates   405133..405543 (-) Length   136 a.a.
NCBI ID   WP_162045551.1    Uniprot ID   -
Organism   Vibrio taketomensis strain C4III291     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 400133..410543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZI12_RS02015 coaE 400692..401300 (-) 609 WP_162045547.1 dephospho-CoA kinase -
  GZI12_RS02020 pilD 401302..402171 (-) 870 WP_162045548.1 A24 family peptidase Machinery gene
  GZI12_RS02025 pilC 402221..403438 (-) 1218 WP_162045549.1 type II secretion system F family protein Machinery gene
  GZI12_RS02030 pilB 403448..405130 (-) 1683 WP_162045550.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GZI12_RS02035 pilA 405133..405543 (-) 411 WP_162045551.1 type IV pilin subunit protein Machinery gene
  GZI12_RS02040 mutS 405794..408361 (-) 2568 WP_162045552.1 DNA mismatch repair protein MutS -
  GZI12_RS02045 - 408446..408934 (+) 489 WP_162045553.1 nicotinamide-nucleotide amidohydrolase family protein -
  GZI12_RS02050 recA 409394..410434 (+) 1041 WP_162047509.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 13904.86 Da        Isoelectric Point: 4.7359

>NTDB_id=73036 GZI12_RS02035 WP_162045551.1 405133..405543(-) (pilA) [Vibrio taketomensis strain C4III291]
MIVVAIIGILTAFAVPAYQNYTKKATLAEFPKVASSVKLAVELCAHEEAGNVTDFMGNCVTKAGSSVPSIALNNIIVTAK
AASAGVAVEAVAGTGGKGPIAAGEKYILTSTYSDQGLTWVATCNDGSKDQTEYCPD

Nucleotide


Download         Length: 411 bp        

>NTDB_id=73036 GZI12_RS02035 WP_162045551.1 405133..405543(-) (pilA) [Vibrio taketomensis strain C4III291]
ATGATTGTAGTGGCGATTATTGGTATTTTGACTGCCTTTGCCGTACCTGCGTATCAAAATTACACCAAAAAAGCGACTCT
AGCGGAGTTTCCTAAAGTGGCGTCTTCAGTAAAGTTGGCGGTTGAATTATGCGCACATGAAGAAGCCGGAAATGTAACTG
ATTTTATGGGTAACTGTGTTACTAAAGCTGGTTCAAGTGTTCCTTCTATTGCGCTAAACAATATTATCGTAACAGCAAAA
GCGGCATCCGCTGGCGTTGCTGTAGAAGCGGTTGCTGGCACGGGTGGTAAAGGTCCAATTGCGGCTGGTGAAAAGTACAT
TCTGACTTCTACATATAGTGATCAGGGTTTAACTTGGGTTGCCACTTGTAACGACGGCTCAAAAGACCAAACAGAATACT
GTCCTGACTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Vibrio campbellii strain DS40M4

54.745

100

0.551
  pilA2 Legionella pneumophila strain ERS1305867

37.879

97.059

0.368
  pilA2 Legionella pneumophila str. Paris

37.121

97.059

0.36

Multiple sequence alignment