Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | GZI12_RS02030 | Genome accession | NZ_AP019651 |
| Coordinates | 403448..405130 (-) | Length | 560 a.a. |
| NCBI ID | WP_162045550.1 | Uniprot ID | - |
| Organism | Vibrio taketomensis strain C4III291 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 398448..410130
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GZI12_RS02000 | rplS | 399029..399382 (+) | 354 | WP_038173824.1 | 50S ribosomal protein L19 | - |
| GZI12_RS02005 | yacG | 399669..399863 (-) | 195 | WP_162045545.1 | DNA gyrase inhibitor YacG | - |
| GZI12_RS02010 | zapD | 399917..400657 (-) | 741 | WP_162045546.1 | cell division protein ZapD | - |
| GZI12_RS02015 | coaE | 400692..401300 (-) | 609 | WP_162045547.1 | dephospho-CoA kinase | - |
| GZI12_RS02020 | pilD | 401302..402171 (-) | 870 | WP_162045548.1 | A24 family peptidase | Machinery gene |
| GZI12_RS02025 | pilC | 402221..403438 (-) | 1218 | WP_162045549.1 | type II secretion system F family protein | Machinery gene |
| GZI12_RS02030 | pilB | 403448..405130 (-) | 1683 | WP_162045550.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| GZI12_RS02035 | pilA | 405133..405543 (-) | 411 | WP_162045551.1 | type IV pilin subunit protein | Machinery gene |
| GZI12_RS02040 | mutS | 405794..408361 (-) | 2568 | WP_162045552.1 | DNA mismatch repair protein MutS | - |
| GZI12_RS02045 | - | 408446..408934 (+) | 489 | WP_162045553.1 | nicotinamide-nucleotide amidohydrolase family protein | - |
Sequence
Protein
Download Length: 560 a.a. Molecular weight: 62203.22 Da Isoelectric Point: 5.3830
>NTDB_id=73035 GZI12_RS02030 WP_162045550.1 403448..405130(-) (pilB) [Vibrio taketomensis strain C4III291]
MNNSLINILLNSGELDENLAHHFSTFQYNSDISPDDIFAHISSADFAQLTSRVFQLPLVQINDYEYEKLCNELGLSSLIQ
KFQTIPVERNSHALVLAVSDPTEEEVIEEFRFATGVPIELVIADLGAIRKAINTLYGRNIGAKGSNKKEINSTELESLVN
LTDDELGSLEDLSQDEAPVSRYIHQVLLEAVRKGASDIHFEPYEHDYRIRLRCDGILLETHQPPVQLGRRLSTRVKILSN
LDIAERRLPQDGRTKLRLSEQIAIDMRVSTLPTLWGEKVVLRLLDSSASQLDIDKLGYSELQKQLYLKALKKPQGLILMT
GPTGSGKTVSLYTGLNILNTPQVNIATAEDPVEINLPGINQVQVQPQIGFDFAAALRSFLRQDPDIVMVGEIRDLETAEI
AIKASQTGHLVLSTLHTNSAAETLVRLQNMGIQPYNIASSLTLVIAQRLVRRLCKHCKQPVKLDIALSSQLGLEPEQIIY
RNNKAGCDHCNSGYSGRLGLFEVMDINHALKKAILDSKSAVDIEALAIKQGMSTLQMSGIENLVQGLTSIEELRRVLFFA
MNNSLINILLNSGELDENLAHHFSTFQYNSDISPDDIFAHISSADFAQLTSRVFQLPLVQINDYEYEKLCNELGLSSLIQ
KFQTIPVERNSHALVLAVSDPTEEEVIEEFRFATGVPIELVIADLGAIRKAINTLYGRNIGAKGSNKKEINSTELESLVN
LTDDELGSLEDLSQDEAPVSRYIHQVLLEAVRKGASDIHFEPYEHDYRIRLRCDGILLETHQPPVQLGRRLSTRVKILSN
LDIAERRLPQDGRTKLRLSEQIAIDMRVSTLPTLWGEKVVLRLLDSSASQLDIDKLGYSELQKQLYLKALKKPQGLILMT
GPTGSGKTVSLYTGLNILNTPQVNIATAEDPVEINLPGINQVQVQPQIGFDFAAALRSFLRQDPDIVMVGEIRDLETAEI
AIKASQTGHLVLSTLHTNSAAETLVRLQNMGIQPYNIASSLTLVIAQRLVRRLCKHCKQPVKLDIALSSQLGLEPEQIIY
RNNKAGCDHCNSGYSGRLGLFEVMDINHALKKAILDSKSAVDIEALAIKQGMSTLQMSGIENLVQGLTSIEELRRVLFFA
Nucleotide
Download Length: 1683 bp
>NTDB_id=73035 GZI12_RS02030 WP_162045550.1 403448..405130(-) (pilB) [Vibrio taketomensis strain C4III291]
GTGAATAATTCACTGATTAATATTTTATTAAACAGTGGTGAGTTAGATGAAAATCTCGCTCACCACTTTTCCACATTTCA
ATACAACTCAGATATCAGCCCTGATGATATCTTTGCCCACATTAGCAGCGCCGACTTTGCCCAATTAACCAGCCGAGTAT
TTCAGCTTCCTCTAGTTCAGATTAATGATTATGAGTATGAAAAGCTCTGTAATGAACTGGGCTTGAGTTCACTGATACAA
AAATTTCAAACCATTCCCGTTGAACGTAATAGCCACGCATTAGTGTTGGCGGTCAGCGACCCTACCGAAGAAGAGGTGAT
TGAGGAGTTTCGCTTCGCGACTGGCGTACCAATTGAGCTTGTTATTGCCGATCTAGGAGCAATACGAAAAGCGATCAATA
CCCTTTACGGGCGTAATATTGGTGCCAAAGGCTCTAACAAAAAAGAGATCAACTCTACTGAACTCGAGAGCTTAGTTAAT
CTTACTGACGATGAGCTAGGCAGTCTTGAAGACTTAAGCCAAGATGAAGCGCCGGTTAGCCGTTATATCCACCAAGTGCT
CTTAGAAGCGGTACGTAAAGGCGCGTCGGATATTCACTTTGAACCTTATGAACATGACTACCGCATTCGCCTGCGCTGCG
ATGGTATTTTACTTGAAACCCACCAACCGCCCGTTCAGCTTGGACGACGTTTGTCTACGCGGGTAAAAATTCTCTCTAAT
TTGGATATCGCTGAGCGCCGCTTACCCCAAGATGGTCGCACAAAATTAAGACTCAGCGAGCAAATTGCTATCGATATGCG
CGTATCTACCCTGCCAACGTTATGGGGAGAAAAAGTGGTGCTGCGTCTATTAGACAGCAGTGCTTCACAACTTGATATCG
ATAAACTCGGTTATAGCGAGCTACAAAAACAGCTCTATCTAAAAGCACTTAAAAAGCCACAAGGCTTGATCCTCATGACC
GGCCCAACCGGAAGTGGCAAAACAGTGTCGCTTTATACCGGCTTAAATATTCTTAACACGCCGCAAGTTAATATTGCTAC
CGCGGAAGATCCGGTTGAAATCAACTTACCCGGCATTAACCAAGTACAAGTCCAACCACAAATTGGTTTTGACTTTGCCG
CGGCGCTGCGCTCATTCTTGCGTCAAGACCCGGACATTGTCATGGTTGGGGAAATACGCGATTTAGAAACCGCAGAAATT
GCAATTAAAGCGTCGCAAACCGGCCACTTGGTGCTCTCTACATTACATACTAACTCAGCGGCAGAGACTTTAGTGCGTCT
GCAGAATATGGGCATTCAACCCTATAACATCGCATCGTCACTCACGCTCGTTATTGCGCAGCGACTGGTGCGCCGCTTAT
GCAAACACTGCAAGCAACCGGTCAAACTAGATATCGCCTTAAGCTCTCAACTCGGTCTTGAACCTGAACAAATCATCTAT
CGCAACAATAAAGCAGGATGCGATCACTGTAACAGCGGCTACTCGGGACGATTAGGTTTATTTGAAGTCATGGACATTAA
CCATGCCCTAAAAAAAGCGATTTTGGACAGTAAGAGCGCGGTTGATATTGAAGCCCTTGCGATTAAACAAGGCATGTCCA
CCCTACAAATGTCCGGCATCGAGAATTTGGTTCAAGGCTTGACCAGTATTGAAGAGCTACGACGCGTGCTATTTTTCGCT
TAG
GTGAATAATTCACTGATTAATATTTTATTAAACAGTGGTGAGTTAGATGAAAATCTCGCTCACCACTTTTCCACATTTCA
ATACAACTCAGATATCAGCCCTGATGATATCTTTGCCCACATTAGCAGCGCCGACTTTGCCCAATTAACCAGCCGAGTAT
TTCAGCTTCCTCTAGTTCAGATTAATGATTATGAGTATGAAAAGCTCTGTAATGAACTGGGCTTGAGTTCACTGATACAA
AAATTTCAAACCATTCCCGTTGAACGTAATAGCCACGCATTAGTGTTGGCGGTCAGCGACCCTACCGAAGAAGAGGTGAT
TGAGGAGTTTCGCTTCGCGACTGGCGTACCAATTGAGCTTGTTATTGCCGATCTAGGAGCAATACGAAAAGCGATCAATA
CCCTTTACGGGCGTAATATTGGTGCCAAAGGCTCTAACAAAAAAGAGATCAACTCTACTGAACTCGAGAGCTTAGTTAAT
CTTACTGACGATGAGCTAGGCAGTCTTGAAGACTTAAGCCAAGATGAAGCGCCGGTTAGCCGTTATATCCACCAAGTGCT
CTTAGAAGCGGTACGTAAAGGCGCGTCGGATATTCACTTTGAACCTTATGAACATGACTACCGCATTCGCCTGCGCTGCG
ATGGTATTTTACTTGAAACCCACCAACCGCCCGTTCAGCTTGGACGACGTTTGTCTACGCGGGTAAAAATTCTCTCTAAT
TTGGATATCGCTGAGCGCCGCTTACCCCAAGATGGTCGCACAAAATTAAGACTCAGCGAGCAAATTGCTATCGATATGCG
CGTATCTACCCTGCCAACGTTATGGGGAGAAAAAGTGGTGCTGCGTCTATTAGACAGCAGTGCTTCACAACTTGATATCG
ATAAACTCGGTTATAGCGAGCTACAAAAACAGCTCTATCTAAAAGCACTTAAAAAGCCACAAGGCTTGATCCTCATGACC
GGCCCAACCGGAAGTGGCAAAACAGTGTCGCTTTATACCGGCTTAAATATTCTTAACACGCCGCAAGTTAATATTGCTAC
CGCGGAAGATCCGGTTGAAATCAACTTACCCGGCATTAACCAAGTACAAGTCCAACCACAAATTGGTTTTGACTTTGCCG
CGGCGCTGCGCTCATTCTTGCGTCAAGACCCGGACATTGTCATGGTTGGGGAAATACGCGATTTAGAAACCGCAGAAATT
GCAATTAAAGCGTCGCAAACCGGCCACTTGGTGCTCTCTACATTACATACTAACTCAGCGGCAGAGACTTTAGTGCGTCT
GCAGAATATGGGCATTCAACCCTATAACATCGCATCGTCACTCACGCTCGTTATTGCGCAGCGACTGGTGCGCCGCTTAT
GCAAACACTGCAAGCAACCGGTCAAACTAGATATCGCCTTAAGCTCTCAACTCGGTCTTGAACCTGAACAAATCATCTAT
CGCAACAATAAAGCAGGATGCGATCACTGTAACAGCGGCTACTCGGGACGATTAGGTTTATTTGAAGTCATGGACATTAA
CCATGCCCTAAAAAAAGCGATTTTGGACAGTAAGAGCGCGGTTGATATTGAAGCCCTTGCGATTAAACAAGGCATGTCCA
CCCTACAAATGTCCGGCATCGAGAATTTGGTTCAAGGCTTGACCAGTATTGAAGAGCTACGACGCGTGCTATTTTTCGCT
TAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Vibrio cholerae strain A1552 |
66.798 |
90.893 |
0.607 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
64.74 |
92.679 |
0.6 |
| pilB | Vibrio campbellii strain DS40M4 |
63.83 |
92.321 |
0.589 |
| pilB | Acinetobacter baumannii D1279779 |
49.146 |
94.107 |
0.462 |
| pilB | Legionella pneumophila strain ERS1305867 |
49.046 |
93.571 |
0.459 |
| pilF | Neisseria gonorrhoeae MS11 |
45.213 |
100 |
0.455 |
| pilB | Acinetobacter baylyi ADP1 |
47.388 |
95.714 |
0.454 |