Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N4T19_RS11700 Genome accession   NZ_CP104377
Coordinates   2519149..2520369 (+) Length   406 a.a.
NCBI ID   WP_116927082.1    Uniprot ID   A0A363RH40
Organism   Comamonas sp. PR12     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2514149..2525369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T19_RS11680 (N4T19_11680) rpmA 2515446..2515706 (-) 261 WP_021027814.1 50S ribosomal protein L27 -
  N4T19_RS11685 (N4T19_11685) rplU 2515722..2516033 (-) 312 WP_027011098.1 50S ribosomal protein L21 -
  N4T19_RS11690 (N4T19_11690) - 2516301..2517230 (+) 930 WP_260720291.1 polyprenyl synthetase family protein -
  N4T19_RS11695 (N4T19_11695) pilB 2517395..2519128 (+) 1734 WP_116927081.1 type IV-A pilus assembly ATPase PilB Machinery gene
  N4T19_RS11700 (N4T19_11700) pilC 2519149..2520369 (+) 1221 WP_116927082.1 type II secretion system F family protein Machinery gene
  N4T19_RS11705 (N4T19_11705) - 2520372..2521247 (+) 876 WP_182343457.1 prepilin peptidase -
  N4T19_RS11710 (N4T19_11710) coaE 2521249..2521878 (+) 630 WP_260720247.1 dephospho-CoA kinase -
  N4T19_RS11715 (N4T19_11715) zapD 2521882..2522637 (+) 756 WP_116927085.1 cell division protein ZapD -
  N4T19_RS11720 (N4T19_11720) - 2522699..2522911 (+) 213 WP_116927086.1 DNA gyrase inhibitor YacG -
  N4T19_RS11725 (N4T19_11725) - 2522959..2523432 (-) 474 WP_260720248.1 NUDIX domain-containing protein -
  N4T19_RS11730 (N4T19_11730) - 2523471..2524427 (-) 957 WP_116927088.1 ATP-binding protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44348.01 Da        Isoelectric Point: 9.6546

>NTDB_id=729220 N4T19_RS11700 WP_116927082.1 2519149..2520369(+) (pilC) [Comamonas sp. PR12]
MATTVNKKTSNEAVYEWEGKDRNGKIVRGESRAGGENQVIASLRRQGILPSKIKKRRMRSGKRIKPKDIALFTRQLATMM
KAGVPLLQAFDIVGRGSTNPSVTKLLNDVRSDVESGSSLSTAFRRHPMYFNALYCNLVEAGEAAGILEGLLDRLATYMEK
TEAIKSKIRSALMYPTSVIIVAFVVVAIIMIFVIPAFKEVFTSFGADLPGPTLIVMAISDFFVSYWYLIFFGIGGSIYFF
LQAWKRSEKMQRTMDRWLLKVPIFGPLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVFAVATEKIQAQVSTG
TSLTVAMSDAHVFPSMVLQMCAIGEESGSIDHMLGKAADFYEAEVDEAVAGLSSLMEPIIIVFLGTIIGGIVVSMYLPIF
KLGQVV

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=729220 N4T19_RS11700 WP_116927082.1 2519149..2520369(+) (pilC) [Comamonas sp. PR12]
ATGGCAACCACAGTCAACAAGAAAACATCGAACGAAGCCGTTTATGAGTGGGAAGGCAAGGACCGCAACGGCAAGATCGT
GCGCGGCGAGTCCCGCGCGGGTGGAGAAAACCAGGTCATCGCGTCGCTGCGCCGGCAGGGCATTTTGCCGTCCAAGATCA
AAAAGCGCCGCATGCGCTCGGGCAAGCGCATCAAGCCCAAGGACATCGCCTTGTTCACGCGCCAGCTGGCCACGATGATG
AAGGCCGGTGTGCCTTTGCTGCAGGCTTTTGACATTGTCGGCCGGGGCAGCACCAACCCCAGCGTGACCAAGCTGCTCAA
CGATGTACGCAGCGATGTGGAGTCGGGCTCGTCACTGAGCACCGCCTTTCGCCGCCATCCGATGTACTTCAATGCGCTGT
ATTGCAACCTCGTCGAGGCCGGTGAGGCAGCCGGTATTTTGGAAGGCCTGCTCGACCGCTTGGCCACCTACATGGAAAAG
ACCGAGGCCATCAAGAGCAAGATCCGCTCGGCCCTGATGTACCCGACTTCGGTGATCATCGTCGCCTTTGTCGTGGTGGC
CATCATCATGATCTTTGTGATTCCGGCGTTCAAAGAGGTTTTCACGTCGTTTGGCGCCGACCTGCCCGGCCCCACCTTGA
TCGTGATGGCCATCAGTGATTTCTTTGTCAGTTACTGGTACCTGATCTTTTTTGGCATTGGCGGCAGCATCTACTTCTTT
TTGCAGGCCTGGAAGCGCAGCGAGAAAATGCAGCGCACCATGGACCGCTGGCTGCTGAAGGTGCCGATCTTTGGCCCCTT
GATTGAAAAATCCTGCGTGGCACGCTGGACGCGCACCTTGTCGACCATGTTTGCAGCTGGTGTTCCCCTGGTCGAAGCGC
TGGACTCGGTCGGTGGCGCCTCCGGCAATGCCGTGTTTGCGGTGGCAACCGAGAAGATCCAGGCGCAGGTCTCTACCGGC
ACCAGCCTCACAGTCGCCATGTCGGATGCCCATGTGTTCCCCTCGATGGTGCTGCAGATGTGCGCGATCGGTGAGGAATC
CGGCTCCATCGACCATATGCTGGGCAAAGCGGCAGACTTTTACGAAGCCGAGGTGGACGAGGCCGTTGCCGGCCTGTCCA
GCCTGATGGAGCCCATCATCATCGTGTTTCTGGGCACGATCATCGGCGGCATTGTGGTGTCGATGTACCTGCCGATCTTC
AAGCTGGGCCAGGTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A363RH40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

53.102

99.261

0.527
  pilG Neisseria gonorrhoeae MS11

53.149

97.783

0.52
  pilG Neisseria meningitidis 44/76-A

52.645

97.783

0.515
  pilC Acinetobacter baylyi ADP1

48.642

99.754

0.485
  pilC Legionella pneumophila strain ERS1305867

48.276

100

0.483
  pilC Acinetobacter baumannii D1279779

46.914

99.754

0.468
  pilC Vibrio cholerae strain A1552

41.162

97.537

0.401
  pilC Vibrio campbellii strain DS40M4

40.25

98.522

0.397
  pilC Thermus thermophilus HB27

38.313

100

0.392