Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K7573_RS16070 Genome accession   NZ_CP104292
Coordinates   3487266..3488525 (+) Length   419 a.a.
NCBI ID   WP_049460357.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ACYCe.8N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3482266..3493525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7573_RS16050 (K7573_16050) pilR 3482460..3483833 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7573_RS16055 (K7573_16055) pilB 3483960..3485693 (-) 1734 WP_227843515.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7573_RS16060 (K7573_16060) - 3485916..3486323 (-) 408 WP_227843516.1 pilin -
  K7573_RS16065 (K7573_16065) - 3486476..3486913 (-) 438 WP_227843517.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  K7573_RS16070 (K7573_16070) pilC 3487266..3488525 (+) 1260 WP_049460357.1 type II secretion system F family protein Machinery gene
  K7573_RS16075 (K7573_16075) - 3488533..3489396 (+) 864 WP_227843518.1 A24 family peptidase -
  K7573_RS16080 (K7573_16080) coaE 3489408..3490019 (+) 612 WP_227843519.1 dephospho-CoA kinase -
  K7573_RS16085 (K7573_16085) - 3490279..3490665 (-) 387 WP_024956768.1 hypothetical protein -
  K7573_RS16090 (K7573_16090) - 3491162..3492529 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -
  K7573_RS16095 (K7573_16095) - 3492492..3493169 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45890.34 Da        Isoelectric Point: 10.1071

>NTDB_id=728355 K7573_RS16070 WP_049460357.1 3487266..3488525(+) (pilC) [Stenotrophomonas maltophilia strain ACYCe.8N]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKSKPLFGAAGSPIKPKD
IAFFSRQMATMMKSGVPIVSSLDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=728355 K7573_RS16070 WP_049460357.1 3487266..3488525(+) (pilC) [Stenotrophomonas maltophilia strain ACYCe.8N]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGACAGGTCAAGCCCAAGTCGAAGCCGCTGTTCGGCGCTGCCGGCAGCCCGATCAAGCCGAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGTCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCAATCGGTGCCGCGGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCTGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCCACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.808

94.511

0.527
  pilC Acinetobacter baylyi ADP1

51.106

97.136

0.496
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

49.631

97.136

0.482
  pilG Neisseria gonorrhoeae MS11

45.137

95.704

0.432
  pilG Neisseria meningitidis 44/76-A

44.888

95.704

0.43
  pilC Vibrio cholerae strain A1552

41.626

96.897

0.403
  pilC Vibrio campbellii strain DS40M4

41.147

95.704

0.394
  pilC Thermus thermophilus HB27

37.811

95.943

0.363