Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K7574_RS16400 Genome accession   NZ_CP104290
Coordinates   3522509..3523768 (+) Length   419 a.a.
NCBI ID   WP_005410799.1    Uniprot ID   A0AAI9CLB5
Organism   Stenotrophomonas maltophilia strain ACYCa.6E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3517509..3528768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7574_RS16380 (K7574_16380) pilR 3517698..3519071 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7574_RS16385 (K7574_16385) pilB 3519197..3520930 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7574_RS16390 (K7574_16390) pilA/pilAI 3521153..3521560 (-) 408 WP_005410797.1 pilin Machinery gene
  K7574_RS16395 (K7574_16395) - 3521715..3522155 (-) 441 WP_005410798.1 pilin -
  K7574_RS16400 (K7574_16400) pilC 3522509..3523768 (+) 1260 WP_005410799.1 type II secretion system F family protein Machinery gene
  K7574_RS16405 (K7574_16405) - 3523776..3524639 (+) 864 WP_005410800.1 A24 family peptidase -
  K7574_RS16410 (K7574_16410) coaE 3524651..3525262 (+) 612 WP_005410801.1 dephospho-CoA kinase -
  K7574_RS16415 (K7574_16415) - 3525522..3525908 (-) 387 WP_227415893.1 hypothetical protein -
  K7574_RS16420 (K7574_16420) - 3526391..3527719 (-) 1329 WP_227415894.1 HAMP domain-containing sensor histidine kinase -
  K7574_RS16425 (K7574_16425) - 3527724..3528401 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45888.35 Da        Isoelectric Point: 10.1706

>NTDB_id=728336 K7574_RS16400 WP_005410799.1 3522509..3523768(+) (pilC) [Stenotrophomonas maltophilia strain ACYCa.6E]
MSVSRSAIKKEPVARATMELQPFVWVGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGASGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
IFLIVVGSAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=728336 K7574_RS16400 WP_005410799.1 3522509..3523768(+) (pilC) [Stenotrophomonas maltophilia strain ACYCa.6E]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAACTGCAGCCGTTTGTCTGGGTGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCTCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGTTCCTCGATGTACGAAG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTCCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAATCTCTCGCGGTTCATGGTGTCGTGGTGGTGGCTG
ATATTCCTGATCGTGGTGGGCTCCGCTGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGTGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTGCCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTTTCGGTCGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.545

94.511

0.516
  pilC Legionella pneumophila strain ERS1305867

52.632

95.227

0.501
  pilC Acinetobacter baylyi ADP1

50.493

96.897

0.489
  pilC Acinetobacter baumannii D1279779

49.386

97.136

0.48
  pilG Neisseria gonorrhoeae MS11

43.97

94.988

0.418
  pilG Neisseria meningitidis 44/76-A

43.609

95.227

0.415
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.895

95.704

0.401
  pilC Thermus thermophilus HB27

37.562

95.943

0.36