Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA/pilAI   Type   Machinery gene
Locus tag   K7574_RS16390 Genome accession   NZ_CP104290
Coordinates   3521153..3521560 (-) Length   135 a.a.
NCBI ID   WP_005410797.1    Uniprot ID   A0AAI9G5C8
Organism   Stenotrophomonas maltophilia strain ACYCa.6E     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3516153..3526560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7574_RS16380 (K7574_16380) pilR 3517698..3519071 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7574_RS16385 (K7574_16385) pilB 3519197..3520930 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7574_RS16390 (K7574_16390) pilA/pilAI 3521153..3521560 (-) 408 WP_005410797.1 pilin Machinery gene
  K7574_RS16395 (K7574_16395) - 3521715..3522155 (-) 441 WP_005410798.1 pilin -
  K7574_RS16400 (K7574_16400) pilC 3522509..3523768 (+) 1260 WP_005410799.1 type II secretion system F family protein Machinery gene
  K7574_RS16405 (K7574_16405) - 3523776..3524639 (+) 864 WP_005410800.1 A24 family peptidase -
  K7574_RS16410 (K7574_16410) coaE 3524651..3525262 (+) 612 WP_005410801.1 dephospho-CoA kinase -
  K7574_RS16415 (K7574_16415) - 3525522..3525908 (-) 387 WP_227415893.1 hypothetical protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14342.60 Da        Isoelectric Point: 6.6934

>NTDB_id=728335 K7574_RS16390 WP_005410797.1 3521153..3521560(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain ACYCa.6E]
MQIQKGFTLIELMIVVAIIAILAAIATVAFQPYIVRTQLTAALADLTPGKTKVEILVNEGRSASLVTPNYIGVAQNAHCS
NVEAELSDSGVGHISCTLKGHSVLDGKDLILRRSAEGIWSCDGSAFEARYRPTGC

Nucleotide


Download         Length: 408 bp        

>NTDB_id=728335 K7574_RS16390 WP_005410797.1 3521153..3521560(-) (pilA/pilAI) [Stenotrophomonas maltophilia strain ACYCa.6E]
ATGCAGATTCAAAAGGGCTTTACGCTCATCGAACTGATGATCGTGGTGGCCATCATCGCCATCCTGGCGGCGATCGCGAC
GGTGGCGTTCCAGCCATACATCGTCCGCACTCAGTTGACCGCCGCGCTGGCCGATCTCACACCAGGCAAGACCAAGGTGG
AAATCCTCGTCAATGAGGGCCGTTCGGCCAGCCTGGTCACGCCGAACTACATCGGTGTCGCCCAGAACGCCCACTGCTCG
AACGTCGAAGCCGAACTCAGCGACTCCGGTGTCGGCCACATCAGCTGCACCCTCAAGGGACACAGCGTGCTGGACGGCAA
GGACCTGATCCTGCGCCGCTCCGCCGAGGGCATCTGGAGCTGCGATGGCAGCGCGTTCGAAGCGCGCTATCGCCCGACCG
GCTGCTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA/pilAI Pseudomonas stutzeri DSM 10701

50

100

0.511
  pilA Pseudomonas aeruginosa PAK

38.926

100

0.43
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.912

100

0.422
  pilA Acinetobacter baumannii strain A118

40.876

100

0.415
  comP Acinetobacter baylyi ADP1

34.932

100

0.378