Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   K7566_RS17105 Genome accession   NZ_CP104286
Coordinates   3679521..3680780 (+) Length   419 a.a.
NCBI ID   WP_032128826.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain ACYCa.1J     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3674521..3685780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7566_RS17085 (K7566_17085) pilR 3674731..3676104 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7566_RS17090 (K7566_17090) pilB 3676230..3677963 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7566_RS17095 (K7566_17095) - 3678186..3678593 (-) 408 WP_099481377.1 pilin -
  K7566_RS17100 (K7566_17100) - 3678746..3679168 (-) 423 WP_012481098.1 pilin -
  K7566_RS17105 (K7566_17105) pilC 3679521..3680780 (+) 1260 WP_032128826.1 type II secretion system F family protein Machinery gene
  K7566_RS17110 (K7566_17110) - 3680788..3681651 (+) 864 WP_099481378.1 A24 family peptidase -
  K7566_RS17115 (K7566_17115) coaE 3681663..3682274 (+) 612 WP_005414310.1 dephospho-CoA kinase -
  K7566_RS17120 (K7566_17120) - 3682534..3682920 (-) 387 WP_005414311.1 hypothetical protein -
  K7566_RS17125 (K7566_17125) - 3683403..3684731 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  K7566_RS17130 (K7566_17130) - 3684736..3685413 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45856.32 Da        Isoelectric Point: 10.1071

>NTDB_id=728277 K7566_RS17105 WP_032128826.1 3679521..3680780(+) (pilC) [Stenotrophomonas maltophilia strain ACYCa.1J]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAVSKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLIAIGAAVGAIMAYKRSPKMQHAMDRFVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=728277 K7566_RS17105 WP_032128826.1 3679521..3680780(+) (pilC) [Stenotrophomonas maltophilia strain ACYCa.1J]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAGGAACCGGTGGCGCGCGCCACCATGGAACTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAACTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAACTGGTGGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGGTCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGCGCCGGCGTGCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCGATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTGTCACGGTTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTCATCGCGATCGGTGCCGCAGTCGGTGCGATCATGGCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGTTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAACAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

94.511

0.52
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

52.13

95.227

0.496
  pilC Acinetobacter baumannii D1279779

50.378

94.749

0.477
  pilG Neisseria gonorrhoeae MS11

44.472

94.988

0.422
  pilG Neisseria meningitidis 44/76-A

44.221

94.988

0.42
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

38.06

95.943

0.365