Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K7566_RS17085 Genome accession   NZ_CP104286
Coordinates   3674731..3676104 (+) Length   457 a.a.
NCBI ID   WP_005410795.1    Uniprot ID   A0A854E393
Organism   Stenotrophomonas maltophilia strain ACYCa.1J     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3669731..3681104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7566_RS17070 (K7566_17070) sucD 3670633..3671508 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  K7566_RS17075 (K7566_17075) sucC 3671530..3672699 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  K7566_RS17080 (K7566_17080) - 3673057..3674670 (+) 1614 WP_005410794.1 ATP-binding protein -
  K7566_RS17085 (K7566_17085) pilR 3674731..3676104 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  K7566_RS17090 (K7566_17090) pilB 3676230..3677963 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  K7566_RS17095 (K7566_17095) - 3678186..3678593 (-) 408 WP_099481377.1 pilin -
  K7566_RS17100 (K7566_17100) - 3678746..3679168 (-) 423 WP_012481098.1 pilin -
  K7566_RS17105 (K7566_17105) pilC 3679521..3680780 (+) 1260 WP_032128826.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49515.76 Da        Isoelectric Point: 6.4407

>NTDB_id=728275 K7566_RS17085 WP_005410795.1 3674731..3676104(+) (pilR) [Stenotrophomonas maltophilia strain ACYCa.1J]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=728275 K7566_RS17085 WP_005410795.1 3674731..3676104(+) (pilR) [Stenotrophomonas maltophilia strain ACYCa.1J]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCTTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAACACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTCGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCATCGCA
AGGGCAGTTTCAGCGGCGCGCACGCCGACAAGCCCGGCCTGTTCCAGGCTGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAACCGGTGGATGTCCGCATTCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCACAGCACGCGCCGCGTGCTCCCGGCAGTGCGGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGTGCCGCCCTTCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854E393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361