Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   N2A98_RS04180 Genome accession   NZ_CP104045
Coordinates   943992..945200 (-) Length   402 a.a.
NCBI ID   WP_275623057.1    Uniprot ID   -
Organism   Pseudomonas sp. FJ2-5-13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938992..950200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N2A98_RS04140 (N2A98_04140) - 939002..940300 (-) 1299 WP_014716868.1 NAD(P)/FAD-dependent oxidoreductase -
  N2A98_RS04145 (N2A98_04145) - 940361..940534 (-) 174 WP_032893628.1 DUF3094 family protein -
  N2A98_RS04150 (N2A98_04150) - 940589..941218 (-) 630 WP_003188431.1 DUF1780 domain-containing protein -
  N2A98_RS04155 (N2A98_04155) - 941346..942035 (+) 690 WP_275623055.1 energy-coupling factor ABC transporter permease -
  N2A98_RS04160 (N2A98_04160) - 942100..942315 (+) 216 WP_003171680.1 hypothetical protein -
  N2A98_RS04165 (N2A98_04165) yacG 942312..942512 (-) 201 WP_003188437.1 DNA gyrase inhibitor YacG -
  N2A98_RS04170 (N2A98_04170) coaE 942509..943132 (-) 624 WP_032893625.1 dephospho-CoA kinase -
  N2A98_RS04175 (N2A98_04175) pilD 943129..943995 (-) 867 WP_275623056.1 A24 family peptidase Machinery gene
  N2A98_RS04180 (N2A98_04180) pilC 943992..945200 (-) 1209 WP_275623057.1 type II secretion system F family protein Machinery gene
  N2A98_RS04185 (N2A98_04185) - 945402..945815 (+) 414 WP_275623058.1 pilin -
  N2A98_RS04195 (N2A98_04195) - 946105..946410 (+) 306 WP_044271514.1 DUF6388 family protein -
  N2A98_RS04200 (N2A98_04200) nadC 946530..947378 (-) 849 WP_047712568.1 carboxylating nicotinate-nucleotide diphosphorylase -
  N2A98_RS04205 (N2A98_04205) - 947623..949770 (+) 2148 WP_275623059.1 DUF1631 domain-containing protein -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43698.43 Da        Isoelectric Point: 10.1144

>NTDB_id=727202 N2A98_RS04180 WP_275623057.1 943992..945200(-) (pilC) [Pseudomonas sp. FJ2-5-13]
MNDTSTIYAWEGINRKGRRVSGTIAGHNLALIKVQLRQQGICPERVRKKSCALPTFKTRITPVDIALFTRQLATLLKAGI
PLLQAFDIISEGVENPQLRELVKALKQHIASGHPLVAALRQYPRYFDELYCNLVAAGEMAGALETLLERVAIHLEKSQRL
KTRIKKAMTYPIAVLVIATGVSTVLLIHVVPQFQNLFAGVNGQLPGFTLAVIALSELLQQAWWMLALGVGAIMVAGHHAY
RTYPGFRHWLAAGLLKMPVAGKLLHKSAVARYARTLSTTFAAGVPLVQALGSVAGAVGHGPFKQAIERMRHDVSTGMQLN
QSMHNSGLFPGMAIQMTAIGEESGTLDRMLEKVANHYESDVDTLVDNLSSLMEPLIMVVLGGIVGALVVAMYLPVFQLGT
AF

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=727202 N2A98_RS04180 WP_275623057.1 943992..945200(-) (pilC) [Pseudomonas sp. FJ2-5-13]
ATGAACGACACGTCGACAATCTATGCCTGGGAGGGCATCAACCGCAAAGGGCGCCGGGTATCCGGAACGATCGCCGGCCA
TAACCTTGCGCTGATCAAGGTGCAACTGCGCCAGCAAGGAATCTGCCCAGAGCGTGTGCGCAAGAAGTCTTGTGCACTGC
CGACCTTCAAGACGCGCATAACGCCCGTAGATATCGCCCTGTTCACTCGCCAGTTGGCCACCTTGCTCAAGGCCGGCATC
CCGCTGCTGCAAGCCTTCGACATCATCAGTGAAGGCGTCGAAAACCCACAGCTGCGCGAACTGGTGAAGGCGCTGAAACA
GCATATTGCCAGCGGCCACCCGTTGGTTGCTGCCCTGCGTCAATATCCCCGCTACTTCGATGAGCTGTACTGCAATCTGG
TGGCGGCTGGCGAAATGGCCGGAGCCCTGGAAACCCTGCTGGAGCGCGTGGCGATTCATCTGGAAAAAAGCCAACGGCTC
AAAACCAGGATCAAGAAAGCCATGACCTACCCTATCGCGGTACTGGTAATTGCCACAGGGGTGAGCACAGTGCTGTTGAT
TCACGTTGTGCCGCAGTTTCAGAACCTGTTCGCCGGGGTCAACGGCCAATTGCCGGGGTTTACCTTGGCGGTCATTGCAC
TGTCGGAACTGTTGCAACAAGCGTGGTGGATGCTGGCGCTGGGCGTGGGCGCCATAATGGTCGCTGGGCATCACGCCTAT
CGAACTTACCCGGGCTTTCGCCATTGGTTGGCGGCGGGTTTGTTGAAAATGCCCGTGGCAGGCAAACTGCTGCACAAATC
TGCGGTCGCACGCTACGCTCGCACGCTATCCACTACCTTTGCGGCGGGCGTTCCTCTGGTACAGGCATTGGGTTCGGTGG
CTGGCGCCGTCGGTCATGGCCCCTTCAAACAGGCAATCGAACGTATGCGCCATGATGTATCCACAGGCATGCAGTTGAAT
CAATCGATGCATAACAGCGGCCTGTTCCCAGGCATGGCGATCCAGATGACCGCAATCGGTGAGGAGTCCGGCACCCTGGA
CCGCATGCTGGAAAAAGTCGCGAACCACTACGAGTCAGACGTGGACACCTTGGTCGACAACCTCTCCAGCCTGATGGAGC
CGCTGATCATGGTGGTATTGGGGGGGATTGTCGGCGCGCTGGTAGTCGCCATGTACTTGCCGGTATTCCAATTGGGGACG
GCGTTTTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(68-191)

Type II secretion system (T2SS), protein F (T2SSF)

(273-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.035

99.005

0.565
  pilC Acinetobacter baylyi ADP1

50.253

98.507

0.495
  pilC Acinetobacter baumannii D1279779

49.873

98.259

0.49
  pilC Legionella pneumophila strain ERS1305867

48.608

98.259

0.478
  pilC Vibrio cholerae strain A1552

39.594

98.01

0.388
  pilG Neisseria gonorrhoeae MS11

40.314

95.025

0.383
  pilG Neisseria meningitidis 44/76-A

39.791

95.025

0.378
  pilC Thermus thermophilus HB27

37.469

100

0.376
  pilC Vibrio campbellii strain DS40M4

37.5

97.512

0.366