Detailed information NTG0727201

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: N2A98_RS04175
• Genome accession: NZ_CP104045
• Coordinates: 943129..943995 (-)
• Length: 288 a.a.
• NCBI ID: WP_275623056.1
• Uniprot ID: -
• Organism: Pseudomonas sp. FJ2-5-13
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 938129..948995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N2A98_RS04140 (N2A98_04140)	-	939002..940300 (-)	1299	WP_014716868.1	NAD(P)/FAD-dependent oxidoreductase	-
N2A98_RS04145 (N2A98_04145)	-	940361..940534 (-)	174	WP_032893628.1	DUF3094 family protein	-
N2A98_RS04150 (N2A98_04150)	-	940589..941218 (-)	630	WP_003188431.1	DUF1780 domain-containing protein	-
N2A98_RS04155 (N2A98_04155)	-	941346..942035 (+)	690	WP_275623055.1	energy-coupling factor ABC transporter permease	-
N2A98_RS04160 (N2A98_04160)	-	942100..942315 (+)	216	WP_003171680.1	hypothetical protein	-
N2A98_RS04165 (N2A98_04165)	yacG	942312..942512 (-)	201	WP_003188437.1	DNA gyrase inhibitor YacG	-
N2A98_RS04170 (N2A98_04170)	coaE	942509..943132 (-)	624	WP_032893625.1	dephospho-CoA kinase	-
N2A98_RS04175 (N2A98_04175)	pilD	943129..943995 (-)	867	WP_275623056.1	A24 family peptidase	Machinery gene
N2A98_RS04180 (N2A98_04180)	pilC	943992..945200 (-)	1209	WP_275623057.1	type II secretion system F family protein	Machinery gene
N2A98_RS04185 (N2A98_04185)	-	945402..945815 (+)	414	WP_275623058.1	pilin	-
N2A98_RS04195 (N2A98_04195)	-	946105..946410 (+)	306	WP_044271514.1	DUF6388 family protein	-
N2A98_RS04200 (N2A98_04200)	nadC	946530..947378 (-)	849	WP_047712568.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 288 a.a.
• Molecular weight: 31852.13 Da
• Isoelectric Point: 7.3271

>NTDB_id=727201 N2A98_RS04175 WP_275623056.1 943129..943995(-) (pilD) [Pseudomonas sp. FJ2-5-13]
MSLLLSEHPWAFVGLALVLGLIVGSFLNVLVWRLPKMLEREWRAQAHEILELPAEPGGPAYNLMRPNSCCPHCNQPIRPW
ENIPVLSYLLLRGRCAHCREPISLRYPLTELACALTCAAVAWHFGFGWQAGAVMLLSWGLLGMSLIDLDHQLLPDVLVLP
LLWLGLILNSADLLTPLPDAVWGAVIGYMSLWSLFWLFKLVTGKDGMGHGDFKLLALLGAWGGWQILPMTLLMASLLGVF
VGLILLRLRKAQVSAPMPFGPCLAIAGWIALLWGGQITDFYLQSVGFR

Nucleotide

• Length: 867 bp

>NTDB_id=727201 N2A98_RS04175 WP_275623056.1 943129..943995(-) (pilD) [Pseudomonas sp. FJ2-5-13]
TTGAGCCTGCTGCTGAGCGAACATCCCTGGGCGTTTGTTGGCCTGGCGCTGGTGTTGGGCCTGATCGTCGGCAGCTTCCT
CAATGTGCTGGTGTGGCGCCTGCCCAAAATGCTCGAGCGGGAGTGGCGTGCCCAGGCCCATGAGATTCTGGAGTTGCCAG
CCGAGCCCGGTGGGCCCGCCTATAACCTAATGCGCCCCAACTCATGCTGCCCGCACTGCAATCAACCGATTCGGCCTTGG
GAAAATATTCCGGTGCTCAGCTACCTGCTGCTCCGGGGGCGTTGTGCCCACTGCCGCGAGCCCATCAGCCTACGCTATCC
TCTCACCGAACTGGCGTGCGCGCTGACCTGCGCCGCTGTCGCCTGGCACTTCGGCTTCGGCTGGCAAGCCGGCGCGGTGA
TGCTGTTGAGTTGGGGCTTGCTGGGGATGAGCCTGATTGATCTGGACCACCAACTGCTGCCGGATGTGCTGGTGCTGCCG
CTGCTATGGCTGGGGCTGATCCTCAACAGCGCTGACCTGCTGACGCCCCTGCCCGATGCAGTATGGGGCGCGGTCATCGG
CTACATGAGCTTGTGGAGCCTGTTCTGGCTCTTCAAGCTGGTCACTGGCAAGGACGGTATGGGCCATGGCGACTTCAAAT
TATTGGCCTTGCTGGGAGCCTGGGGCGGCTGGCAGATTCTGCCGATGACCCTGCTGATGGCCTCGCTGCTGGGCGTGTTT
GTTGGGTTGATTCTGTTGCGTTTGCGTAAGGCCCAGGTGTCAGCGCCAATGCCGTTTGGCCCCTGCCTGGCAATTGCCGG
CTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAGATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (18-124)

• Type IV leader peptidase family (Peptidase_A24) (134-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.71	98.264	0.528
pilD	Vibrio campbellii strain DS40M4	50.352	98.611	0.497
pilD	Neisseria gonorrhoeae MS11	50.37	93.75	0.472
pilD	Acinetobacter baumannii D1279779	47.985	94.792	0.455
pilD	Acinetobacter nosocomialis M2	47.253	94.792	0.448